RNA id: TU304681


Basic Information

Item Value
RNA id TU304681
length 1812
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113530357
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18809063 ~ 18863122 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATACATCTCCCTCCACTGCGGGTTGAGGTTGTTGTCCACATGGCGTGACGTGAACGTTTGCGTGCCAACCCTCACTACGGCATACGGGTCCGACTTGCCAGTGATCACGCGCTTGATGTAGCTATCCTTGGCGGCCAGGTTCTCGGCTTCCAGCAAGTGGATCCGCACGATGCCCTGCGGAAAAGAGGATGAATCACATATTTctgatggaaaaagagagaatagGAACATTCAGCAGGCAGAATCCAGCTGGAGACAccggaggaaacccagacaCAACATGGGAAGTACATGCTTTCACACAGAGAGCAGTCcaagctcaggatggaaccagggaccctggagctttgAGGCAGCCATGTTAGCCACAACAGCTTGCTGTCACAACTGGTCCAATACCAGAACATTTAGTAAAATGGCTGCTGCAGGGAGCCATCAACAGGccactttgtttgttttgctaaccaaaacaagacaatattaaactttttgtaaataataGATTTTCCATGTTCTATTTAGTAGACTAAAGAACAGATCTGTTCAGGGCATTATTTGCAGTTACATTAACACGGATACCATGTAGATGAGCATGGAAAGGAATGTCCACTATAAGTCAGAAAAAGCTTGTGTGGCtaaaggttttcattccaaacaaATGCTTGCCATAAAACCCTCAACCACTCCCTTTGCATACTGGCCTTAAGAAAAGGTACAGAATCATTTAACAAGCcgggagcattttttttttttttttaaaaaagctgaaGTTCAATTTTAACCATTTTCATACATGTACTTCACTACAATTCCTACAACCCTAGCCCAATTTACATACACCCACTGAATAGATCGATCTTGGGAGACTAGTTCATCTGTTGGCAAGCACAAATCAGCACCTAGCCTATACCATATTTGTTCCTGTCAGTGGGGTGGAGACTTTTGAATGAGGCAAAAAATTACTCAGGGGTAACTtaccaaaaagacaaaaatccaaatacagaaCATGCAATATTACTTCCACATGCATGTGTAGCAGTAAAGACTAGCAGAGTGGCAGCTTAATTAGGTGCATCTTGCACTGCAGTGAAAGTCACAAGCCACACCATTACcaaaattgcattaaatatCAATCTGTTAGTGACCTGGTCACTCTAAATAGccatataaaacatttaagtaTTCAAGACGTCCATGGACAGTCCATAGCGTCTCAAATTGTTTTAGCAAAATATTCATACCTCAAACTATTCCAACACTTACTCTGCAAACTTGCATCTTGATTCCTACCTAGTAGGTGGTTTAGGTCTGCATAATCATTCAGCCAGAGCACAACAGTAGATTTTAAGCCAAACTTTTATTGAACAGGTATTAACAAAAGACGCTGCACTGGCAAGTCCAAGAGAGCTTCTAAGGTCAAGACCAACACCCAACTGGACAGCCTGGAGATGGAAGCTTTCTCCATCACACTCGACTGGCTTCACAGGAGATGGACAGCACCTTCAGATGGACTTTTCCAGAAGACTCTCAAAGGGAATCCAAGATGAACAGGACCTCAGCTGCAGCAGAGAGGTTGCAGTTTACTTGGACCTCTGCCTCATCTTTCTCCTTTTACGCTTCagcctggggaaaaaaatatatatatatatattcagactTCCCCCAATGCCACATGAATATTCAATAATTAAAGGTGATCAGCGGACAAAAagtacacacacttacaggtGAAGCGACCTTCCACGTATAGTGGTAAGATTggagaaaaatgacaaatccTTCAGCTCTGCAGGCCAAGACTGAATATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304576 lncRNA downstream 155748 18653093 ~ 18653315 (-) True G257322
TU304084 lncRNA downstream 459371 18348843 ~ 18349692 (-) True G256929
TU304027 lncRNA downstream 522972 18285815 ~ 18286091 (-) False znf217
TU303854 lncRNA downstream 923484 17884243 ~ 17885579 (-) False kcng1
TU303780 lncRNA downstream 1018156 17790641 ~ 17790907 (-) True G256689
TU304741 lncRNA upstream 74109 18934897 ~ 18936391 (-) True G257458
TU304757 lncRNA upstream 78694 18939482 ~ 18939782 (-) True G257471
XR_004579694.1 lncRNA upstream 257061 19117849 ~ 19119020 (-) True LOC117599228
TU304768 lncRNA upstream 257164 19117952 ~ 19118565 (-) False LOC117599228
XR_004579693.1 lncRNA upstream 297503 19158291 ~ 19178092 (-) False LOC113530339
XM_026920788.2 mRNA downstream 105139 18693407 ~ 18703924 (-) True idh3g
XM_026920149.2 mRNA downstream 133851 18657095 ~ 18675212 (-) True avpr2aa
XM_034311882.1 mRNA downstream 201645 18565524 ~ 18607418 (-) True LOC117595686
XM_034311881.1 mRNA downstream 243536 18540263 ~ 18565527 (-) True plekhg5b
XM_026921196.2 mRNA downstream 277811 18509148 ~ 18531252 (-) False LOC113530839
XM_034311652.1 mRNA upstream 75789 18936577 ~ 19064473 (-) False lrp1ab
XM_034311653.1 mRNA upstream 75789 18936577 ~ 19064473 (-) True lrp1ab
XM_026920189.2 mRNA upstream 258243 19119031 ~ 19127613 (-) False si:dkey-21c19.3
XM_026920188.2 mRNA upstream 258243 19119031 ~ 19127613 (-) True si:dkey-21c19.3
XM_026920220.2 mRNA upstream 269320 19130108 ~ 19142474 (-) True LOC113530333
TU304189 other downstream 295806 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 508376 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 895786 17893081 ~ 17913277 (-) False kcng1
XR_004579680.1 other downstream 1113465 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1977804 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579689.1 other upstream 77122 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 267676 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579690.1 other upstream 509899 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 754739 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 1240211 20100999 ~ 20109210 (-) True kansl2

Expression Profile