Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579694.1 |
| length | 946 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | LOC117599228 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 19117849 ~ 19119020 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU304757 | lncRNA | downstream | 178067 | 18939482 ~ 18939782 (-) | True | G257471 |
| TU304741 | lncRNA | downstream | 181458 | 18934897 ~ 18936391 (-) | True | G257458 |
| TU304683 | lncRNA | downstream | 254727 | 18809063 ~ 18863122 (-) | False | LOC113530357 |
| TU304681 | lncRNA | downstream | 257061 | 18809063 ~ 18860788 (-) | True | LOC113530357 |
| XR_004579693.1 | lncRNA | upstream | 39271 | 19158291 ~ 19178092 (-) | False | LOC113530339 |
| XR_004579692.1 | lncRNA | upstream | 39271 | 19158291 ~ 19163160 (-) | False | LOC113530339 |
| XR_004579691.1 | lncRNA | upstream | 39271 | 19158291 ~ 19163160 (-) | True | LOC113530339 |
| TU304796 | lncRNA | upstream | 39684 | 19158704 ~ 19177957 (-) | False | LOC113530339 |
| TU304813 | lncRNA | upstream | 69657 | 19188677 ~ 19231641 (-) | False | G257518 |
| XM_034311652.1 | mRNA | downstream | 53376 | 18936577 ~ 19064473 (-) | False | lrp1ab |
| XM_034311653.1 | mRNA | downstream | 53376 | 18936577 ~ 19064473 (-) | True | lrp1ab |
| XM_026920788.2 | mRNA | downstream | 413925 | 18693407 ~ 18703924 (-) | True | idh3g |
| XM_026920149.2 | mRNA | downstream | 442637 | 18657095 ~ 18675212 (-) | True | avpr2aa |
| XM_034311882.1 | mRNA | downstream | 510431 | 18565524 ~ 18607418 (-) | True | LOC117595686 |
| XM_026920189.2 | mRNA | upstream | 11 | 19119031 ~ 19127613 (-) | False | si:dkey-21c19.3 |
| XM_026920188.2 | mRNA | upstream | 11 | 19119031 ~ 19127613 (-) | True | si:dkey-21c19.3 |
| XM_026920220.2 | mRNA | upstream | 11088 | 19130108 ~ 19142474 (-) | True | LOC113530333 |
| XM_026920221.2 | mRNA | upstream | 24717 | 19143737 ~ 19148012 (-) | True | fitm2 |
| XM_026920207.2 | mRNA | upstream | 112826 | 19231846 ~ 19251695 (-) | True | ada |
| XR_004579689.1 | other | downstream | 53267 | 18937910 ~ 19064582 (-) | False | lrp1ab |
| TU304189 | other | downstream | 604592 | 18509155 ~ 18513257 (-) | False | LOC113530839 |
| XR_004579746.1 | other | downstream | 817162 | 18285486 ~ 18300687 (-) | False | znf217 |
| TU303855 | other | downstream | 1204572 | 17893081 ~ 17913277 (-) | False | kcng1 |
| XR_004579680.1 | other | downstream | 1422251 | 17676565 ~ 17695598 (-) | True | LOC117599224 |
| trnak-uuu_17 | other | upstream | 9444 | 19128464 ~ 19128536 (-) | True | trnak-uuu_17 |
| XR_004579690.1 | other | upstream | 251667 | 19370687 ~ 19387041 (-) | False | LOC113530570 |
| TU305224 | other | upstream | 496507 | 19615527 ~ 19621560 (-) | False | magi3a |
| XR_003403201.2 | other | upstream | 981979 | 20100999 ~ 20109210 (-) | True | kansl2 |
| XR_003403208.1 | other | upstream | 984754 | 20103774 ~ 20103911 (-) | True | LOC113530994 |
