RNA id: XR_004579693.1


Basic Information

Item Value
RNA id XR_004579693.1
length 3896
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC113530339
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19158291 ~ 19178092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGATGTAACTCCGCTGCCTATTTCCCCTTTGAAACTTCAAACTCCAGTTTGTGAACAAAGTCCTGTCTATCTTCACAATAGGGATCTCCGACCACTGACCAAACTCCATTTGTAACCACTGCCTATTTGTACCTTCTCTTGAATGAGTCTTGTTCATTTCTACTGAACGGGACATGGCAGTAATGCCACGATCTGAATCACCAGCGATTTAGCCTACATGGAATAGCATGCTCTTGGAATAATTGTGGATAACTTTGGGAATATATCAGTTTCTCCGTTTGGATGCCTGGAAGGGGTTTATGATGCTTGGCCACCTTGATAAGAATGACAAGAGAGtagaagagagaaggaaataTGCTTGCTCCAGCACATCTGAGGCCAGTAAAAAAAAGCCAGCGTGGACTCACTGGGGTAGATGGCACAGGCTCAGAGTTCTGGACCAGCTTGAGATGTTGTCCTGGACTAATTGGGAGGGAAAAGGATCAATTGACATGTGAAACatgctcattttatttaaaagtgttgCCCTGGCCCAAGCACCATGCACAACAGGACTGTATAAGGAATTTAAAGTATGGTGTTAATACCTTCCAGTGGTGATGGACAGGTTCTGGCCTGTGTACCTCATGACATGTGGTGGCCCGTGATCCCATATGCACTGTGAGGCCCAGGACTCTGCTGATTTAGCAAGCCTCTCATCCCACACCTTTCCAAACAGAGAACAACGAGAAGACTTTTTACAAATTAACATCACCAGTGTAGTCAGTTGTTAaacaatatttcaaatatttcagaaCTGACAAGGAGGGGCACTACCATATACTCCATGTTTGCTGCAGGTGGGAAGACCTGAGATCGCACACGGTTGTGGTATTCCAGCAAAGCCATCATATCCTTGGAGGAAATGTAGCGCTTCCTCCGGCTGTGAGGCACATCGCTGCTGCTCCTGTTCCTCCAGCTCAGTTCAATCCCAAAATGAGCCACAGTGAGGGGAGAGAGCTCTGTGGTGTTGGTCAGAGCCACAGCTGCTCTGGTGCACGGCATCGCCCACAAGATGGCAGCCAAGACCAGGTGACTGCAGCACACACGCATGGTGCTGCAGTGGAAGGAGCTCCTTGGATAAAGTCTTGCTACTGTGGAGGAATGggttaattacttaattacttaattaattaattatttttaaattaaactagaTATTGAGAAATACTCTTATAAACAATGCATTATGGTTGACTCTGGATTTTATGACACAAAGATGCtgatgtaaatgaataaataatataaataatatactgaGTTCCATAAAGTTTATTCAAAATGAATTCAGCATGACTAGTAATAGAGATATATAATTTATCTAGTATATAAGTACTGTAgtatataagtaatataaataaGATTCATTTTAGTGATCATTAAAATTGAGTACCAATACTCTCAGCAAACTCATTACAGTACAGCAAATATACATGCAAGTATAAAAAagtgcattcacacacacaaaaaaagaagtcattatAGAGCTAAACTAAAGTTaccatattttttaattaaggaGAAGCTTTGctaatgcaaaattaaaaaaaatataaatgcacaAATGACTTCTGCAGCTAGGTGAACAGTTGTAGCCACCATctgaaaatatacagaatatgaGCTCCAGATTTTGGTTTACCTTGTAATTAAGCCCTACAATCCCCCTAGCGAAAGCGTGAGAGCTCCTCACTTTGCATACCTTCAGTCAGGATTCCAGCACTTTGGTGCAGCTGAGCCTGGAAGTGAGCAGAGATCTGCACTTAAACGCCAGCCTTTGCAAACAACACCGTTTGACAGTACTTAACAAGACGTGCGGTGACTGAAGCCATCTGACGTCGAAGAGAAGCTCTGAGCTTCTTCAGCCCCCACAGGGATGGTCCCTGGgttcacaaaacacactgaagggagtttttgctttttcagcACACACTCTCGACGTGAGCGCCAGGCTTCCCGCCTTTCCTCAGCCAAAACCCACAAATGGTACTTTTCTTCTAAACAGAAGTAATCAATAGGAATGGAAAACTTCACctgggggggtgggggttgtTCTGCAAGaccatttctattcatttttaactGGTGGAGTTTAATAGGTTTACCTAttatgaaaaagaaatgcaatCATTTGTTACTTACCAGCATATCCATATTCACACATACTGAATCCTAAGAAAAGCAGCATTTATAAATAGGCTAATTTCATTccattctcattttttttatcaccatATCATATGGTGCATATTTGTCTGAGCACCTCACATATAGCTCTGATTGTATTTTGGGAAAATATGTTATGATCTAGCATTAatgttatgtatgtattttagaTGCATGctgcatgaaaaataaatgccatTTGCCATATTTGTTGCCAAATTCATCTCCACCCAGAGCCTAGTAGTCTGTTAAAGTGGTGAAAAAGTCAGTGAAATTTACAGAATATTCAATTTACACCAACTGTAGCAGaaagccaagacatgtttgctATTTGACATTTGCTTGTTATGGAGGCCCATTTCTGCCAATTAAAAAAGCAATATAGTATAATCATAATGACGAGAAAGATTCTCAAATTTAACATAACTgtgacttaatatctcattgaAGATAATAAACATGAGATAAACATGTCTTTATGACAGTATCTCTTTATTATACACTCTGAGCTCAGGGATGTTGAAATGACAGCTGAGGAAGGGGGAGAAAAAGAAGCATAGATCAGGGTTTTATAAGACAAAATACTGtatcattttcctctgattaCTAGCATTATCATTTCCTAGAAATGAATTCCTAGCTAATGTCACTGGTCCTGTGTATATTTATGTCACTATACCTTTGTACAGACACTTGATCTTGATCTAAAGCTTTAATTATTTGGGGTGGATTTGTTCTGACAGCTACATTAACACGAGAAAGAAGTCCAATAAGCGCATGGTGGGgatgaaagagaggaaaaacatcTATCAGACAAAAGCCAGTGCACCAGATGTCCAGGATTCCAGGAAGGCTTGAAGGAGTCATGCCATGTGCAACACATCTCAACCTAGACTGCTTGTAGTGCCAAGGTACATGCCACGGACTGGCACAGATCCACCGCACGGGGTCACTGAGAGCATCACAGTCCTGCGAACTattttttttcacaaacgGACTGGATGTATGCCACAAGTATGACATCACTGAAGAGGCATGAGCAAATTTTTGTCCACAGGTTGCTGTAGTAGTAAAGTGCATTCTCCACCGCTGACATCCCCGCTCGTATTCACGTGAGGATTCCTCCACGGCATACGTTATTTCAGCATTTACTAAATACGCTGTGAACCTTTATAGTATTTACTGAGGCCGTGTAATGCTCACCCCACTGTTACTATAGTGAAATGGCGCATGTTTTAGTTCCTCCCAGACAAACAGACATCACTGTGGTCCATTGTAGAGCTAGCAATAGGCCAAGAGGAAGGGATTTTAAGAGGAAAGTCACTACTGTTGCTGAAGTCATGGGTTTAGGTTTGCTTATTCCTAAGACCTTGCCTCATACAGAAACTCACAGTACTGTTGTGAggatataataatatgtttatatattgttccattaaaaatacactatacaAGTGTAAATAATGATACAGTGGGGTCCACTAgtaaaaatgcttctattttgcattttctatttttttctttacaaattattttatggacaacaacttgagtgaaagaTCTTTGAAATCTTTGAAATTTttgcatgaatttcagagtttcttagtattagATTTGTCCCCTttttctttaatgacagtgttgaGCTggcctggactccacaagtttgtgcaaaaccttatgatccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579694.1 lncRNA downstream 39271 19117849 ~ 19119020 (-) True LOC117599228
TU304768 lncRNA downstream 39726 19117952 ~ 19118565 (-) False LOC117599228
TU304757 lncRNA downstream 218509 18939482 ~ 18939782 (-) True G257471
TU304741 lncRNA downstream 221900 18934897 ~ 18936391 (-) True G257458
TU304683 lncRNA downstream 295169 18809063 ~ 18863122 (-) False LOC113530357
TU304813 lncRNA upstream 10585 19188677 ~ 19231641 (-) False G257518
TU304811 lncRNA upstream 20444 19198536 ~ 19231641 (-) True G257518
TU304919 lncRNA upstream 218850 19396942 ~ 19397151 (-) True G257595
TU304920 lncRNA upstream 221495 19399587 ~ 19399842 (-) True G257596
TU304928 lncRNA upstream 253070 19431162 ~ 19431386 (-) True G257604
XM_026920221.2 mRNA downstream 10279 19143737 ~ 19148012 (-) True fitm2
XM_026920220.2 mRNA downstream 15817 19130108 ~ 19142474 (-) True LOC113530333
XM_026920189.2 mRNA downstream 30678 19119031 ~ 19127613 (-) False si:dkey-21c19.3
XM_026920188.2 mRNA downstream 30678 19119031 ~ 19127613 (-) True si:dkey-21c19.3
XM_034311652.1 mRNA downstream 93818 18936577 ~ 19064473 (-) False lrp1ab
XM_026920207.2 mRNA upstream 53754 19231846 ~ 19251695 (-) True ada
XM_026920203.2 mRNA upstream 131820 19309912 ~ 19319756 (-) True gdi1
XM_034311884.1 mRNA upstream 156033 19334125 ~ 19363567 (-) True LOC113530330
XM_034311655.1 mRNA upstream 192595 19370687 ~ 19387041 (-) True LOC113530570
XM_034311656.1 mRNA upstream 192595 19370687 ~ 19386537 (-) False LOC113530570
trnak-uuu_17 other downstream 29755 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 93709 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 645034 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 857604 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 1245014 17893081 ~ 17913277 (-) False kcng1
XR_004579690.1 other upstream 192595 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 437435 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 922907 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 925682 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 932371 20110463 ~ 20119949 (-) False mlh3

Expression Profile