RNA id: XM_034311667.1


Basic Information

Item Value
RNA id XM_034311667.1
length 2911
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC117599227
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19431450 ~ 19437634 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTCCTATACCTAGTGCTTATATTTCAGGttcatgCCCAGTTGCAGTGTGATAAATCCACCATCCATACCACAATTGGGAGAGAGATTAATGTTTTCTGCAGTTACAATGCAAAACAGTTTTTATTCAGTAAGAAATACTGGTGCCTTGGGGAGTCCAGAAGCACTTGTGAGGTATTGATGGATACAGATGGATTCACTACAGCAAGGCTCAAGAAAAAAGCAAGGATATATGAAACAAGGTTCAGAACCTTTCACATTGTCATGACAGGACTCCAGCTAGAGGACACTGGAATCTACTGGGCTGGGATTGACAAAATATATGCTGATATCATGTTTAGGATAAAAGTCGTGGTAACAGAAGAAGCTGTGAGCAGACCCCAGGTTTGGTTAGATGGCTTGCCTATGGTGACATGCCAGGGACAGTCGGTTCTCCTGCGCTGCCGGACTGAGAGAGGCACCAATGTGAAGTACAGCTGGTCCAGAGAGGCTCAACCTCAAGAAGTTCTTTTACAAAGCTCTGCTGATCTTCTCTTCCGCTGTGCCTTTCTCACTGAAGACGCTCAGTACATCTGTTTGGCTCAGAACGCTGTGAGCAGAGAACAGAGTAAACCCATTTCCCTTCACCTTCTACAGGCTGGACAGGAGAACTGCATTTATTCACTCACGTCTGATGAGCTTGAAACTTATGACTGCAGGACAACGACAGCATCACCAGAGATAAGCACCAGCACTTCCGTGGAAGTTTCAAGCTCAGAGTTGGTCACGCAGAGCTGTTCGGGTGGAAATCAGTCACTTTGTAGCAATCAAACGCAGAACTGGAATGAAAACTTCTGTCTCAGGACATGGTCAGGAGTGCCGCTGTGGTACAACATTGTTCGCTGGCTTCTCTTCATTGCTATGATTACCATTTTTGGATTGTTGCGCTCATGCACGAAGACCAGCAGAGTGGCTTGCAAACATCACAACCAAATTTGATGATGGAAGGTGTTGCTTTTGTTTCACAAATGTACTTAAGCCTTCTTCCTTTTTCATAcgcccttttctttttttacacttatgttGAAGTCTGGTTTACCTCTTTACTGCACAATGTTGCTGTATGGCGACATACCATTTGTTTTCGAGCATTTAAAGACAACCTTGCCACCAATTGGCTTTTTTTTGTAGACATATGACATTTAAATCTCCCATCATCCTCCTCTTTCCTATCATTTTGTGCCACCACTGCAAACGTCTGTTATTCATCAATAAtctgtactgtatattcaaaATAGGGACTCAGTGGTGGCTTAGCAGTCAGGACtttggactactgattggaTGATTATGAGTTCAAATTCCAGGAATGCCAAGGACCTTAACTTTCATCTGCTCTGTTCAGCTgcaagttgctttggataaaagagTCGGCCAGATTAGATTAAACAATGCCAAAGCTCATTAAAGCTTTGTCattgtttaaatgttgtttttgtaaaatataaatgctgTCATACAGCAAGACTGTGCAATGAAGGACCCACATCATCCAATTTAGCAActgaaaaatcacagaaaaaacagaaaaatcatttcattggTGTAAATGTGATATGATTTCCATTGATTTTGTAAGTTTTGTAAAGAAGAAATGCATTATTCCACTTTTGTTTCATGCAATGATCATAATGATGTTTACATGTACTTTGTTATGTACAGGGACGAGGAAATGTTCTATGTACTGGGTATAAAGAGGGTGGCACTGTTTAGTAAAAATGAGTTAGAGCAAGGGTATCAAACATAAGGCCCACAGGCCCAGGACTGGCATGATGAAGGTTCTAATCTTGCCCATTAACTGAATTTTGAATCCGGGTTCTATATGAAAATGGTCTTGTGGACTGTAATTGAACTGAAAGATTCAAAAATACAAGCTAGtctccactagggggcaaaacaGAGCAATAAGGTCAGGCCATAAACCtagctactgacaaaatgtaCTAATAATGTAATTCTTAATTAGCAAGCTAAACATTTGATGCTTGTAATCCTATCTCATTCCAAAAGAACTACTTATGGGGTTTCATGGCAACAGGTGCGAATACTAATGAAATAActacttgtatttttttatttgtaaataattttgcagactatattgatttttttccccccacttcaATATTAGGGGATATTTCATGTAGATTGAAGACATAGAATCACAGTTAAATTAACTTCAAGGGGTTGAATAATTAAATGCAGTCAGTTCATCTGGTTTGTAggtgatatacactcactgggcacttttattaggaacacctatacacctgttcattcatgtatttatccaatcagccaatcatgtggcaacagcacaatgcataaaatcatacagatatacagtaggtcaagagcttcagttaatattcacatcaaaaatTAGAACAGCTGACAGGAAGATAagaactcaaataaccactctttacaaccatggtgagcaaaAAGGCATCTCGGAATGCACAACAGATTGAACCTggaaaaatgtcaaatgtccacctgtgcccactgtaaccttTACAATCCTGGTAAGCAGTTAAGctgttctttgctgacaggagtggaacctgatgtggtcttccgTTGTTGctgcccatccacctcaagatttgaagtgttgtgcgttctgagatgctttactGCTtaacatggttgtaaagagtgcttattttagttactgtagacttcctgtcaggttGAACCAGACTCTCAATCCTCCCCTGTCCTCTCAGATTAACAAGGCATTCCTGCCCACAAAACtggatgttttgtttgttttttgcaccattctttgtaaactatagagactggtgtgcatgaaaatcccaggagatcagcactttctgtAATACACCCTACCtagcatcaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304928 lncRNA downstream 65 19431162 ~ 19431386 (-) True G257604
TU304920 lncRNA downstream 31609 19399587 ~ 19399842 (-) True G257596
TU304919 lncRNA downstream 34300 19396942 ~ 19397151 (-) True G257595
TU304813 lncRNA downstream 199810 19188677 ~ 19231641 (-) False G257518
TU304811 lncRNA downstream 199810 19198536 ~ 19231641 (-) True G257518
TU305201 lncRNA upstream 26420 19464054 ~ 19465336 (-) True G257819
TU305220 lncRNA upstream 41890 19479524 ~ 19479732 (-) True G257838
TU305250 lncRNA upstream 142578 19580212 ~ 19581682 (-) True G257866
TU305254 lncRNA upstream 148694 19586328 ~ 19591130 (-) True G257870
TU305265 lncRNA upstream 174286 19611920 ~ 19614679 (-) True G257880
XM_026920193.2 mRNA downstream 1474 19403660 ~ 19429977 (-) False LOC113530320
XM_026920192.2 mRNA downstream 1477 19403660 ~ 19429974 (-) True LOC113530320
XM_034311655.1 mRNA downstream 44410 19370687 ~ 19387041 (-) True LOC113530570
XM_034311656.1 mRNA downstream 44914 19370687 ~ 19386537 (-) False LOC113530570
XM_034311884.1 mRNA downstream 67884 19334125 ~ 19363567 (-) True LOC113530330
XM_026920190.2 mRNA upstream 28994 19466628 ~ 19481596 (-) True LOC113530319
XM_026920182.2 mRNA upstream 45459 19483093 ~ 19621610 (-) True magi3a
XM_026920184.2 mRNA upstream 48215 19485849 ~ 19621613 (-) False magi3a
XM_026920226.2 mRNA upstream 196420 19634054 ~ 19651590 (-) False tmem269
XM_034311672.1 mRNA upstream 196420 19634054 ~ 19651589 (-) False tmem269
XR_004579690.1 other downstream 44410 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 302915 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 366869 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 918194 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 1130764 18285486 ~ 18300687 (-) False znf217
TU305224 other upstream 177893 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 663365 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 666140 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 672829 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 814536 20252170 ~ 20271907 (-) True G258077

Expression Profile