RNA id: TU305050


Basic Information

Item Value
RNA id TU305050
length 1842
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G257710
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19733351 ~ 19735213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACAATTAATCTCATCGCTCATGTCTGGACAGTCTGGTCTGTTGTCACAGACAAAATTCAGAGGTATACACACTCCGGTTCTGCAGCTGAACTCGTCAGTGGCACAGGGCACAGGCGGACTGGGCTTCACTAACAAGAACAGCGACAGTCAGTGAGAGTGGACCAGACTACGCAATCTGAATCCATGTCTTCATGCAAACACACGGCAACCTCTCAAAgcacatcatcacacatcagAAGCGATACTTCATTGTACAGCAGAGTCATCCACTGTCACACTCGAGAATGATACTGTATAAGAGCTGCATTCATCATGAGCCATGAGGCTGGGCATGCAAAGTATTTCATTCTTCTCCTCAAATGTAAGTTATATACATCCATGCATGAGAAGGTCCATTCCTTGCCAATACATTTCTCGCAAGTGAAAACGGCTGCACTCTACAGTCGCCATGCAGCAGGCATGGCACAGTACAAACCTGGAGAAGCTAGAGGCTCCACATGGAGGGCGGTATCAGCTACAAACCAGACATAAAAATGATCTTTATCATCGCACTCTGGTTGTCTCGCGTAGCCACACTGACATATACAAATATTGGAAGGTGAAAAACAGTCTCGTCTCAGAGTCCTAGAAGGCTACAAGCACCAACAAACCTAATTCAGGTCATCATATAATGATCAAACTGTTGGATCAGGAGTGTTGGAGCAGAGATGTGCCAAACCTTTGAGACTGAATGTGAACAACATGAACGTAGAGCATCCTAGGGGTTGCCTAGACTAGTCATCCCTAGTGTTCCCTAGTTGCTACTGGGGGATTTGTCAACTAGTCAGCATGATGGAACAAAACAGTGAGCCAGACATTAAAGAAAGCAGCCAAAAgtgttttctgaaaatatttcagactggATAAAGCCAATTCTACAGTCACCTGCACAAGACGAcattcttttgctttaatgaaccGTTAACACAGTTATTTCTGTTGTCCTTTGAAGCTATATATTTTTCGGAGCCGCGGGTTGCACATCGCTATCTAATCCCGCTCAGCTAGTTTAAAGTCAGATCTCAAAGACTTGGCATTAAATCCTTACATACTGCAATATCATACactgatttatgatttttgcacatttattgcaccaaattatttactttcatcATTAACAGAGTAGCCTAAAAATGCACTGAAGCTAGAATTTGATTTATAggctgtgtTTTTCTGTGCTCTtttctacacaaataaaacagcctaAAAATAGCGACGTCCTTtaacagtttttgctttaactatggaaatAGACTACTAAAAAAATTTGTAGTCATGCAACCCCTAGCATACTAAAGGTCAAAGATGTATAAATGCATTGATGTGATGGTATTCAGGGCCCTTACGTTCTCCTAGGCGTCTAAACTCGAAGCCCCTGACAGACGTCACGTAGGATGCAATGGATCCATCGCTAACCACGGAGTAAAGCACACCTCGGATCTGGGCTTCATTAGAGTTGTCTTCCGAGCCCACGTCCAGTTCCACAAACACATCCTTGCCGATTTGCCTTAAAACACAAGATAGGTACCATgtgaaacattaaacatttttgagacatgctgttcttggaaaataatcaactttgaagAGTTGCAACCGTAATCCAGCTTCAAGACGGCTTGGAGTGAACCAttctgtagttgattattttcctataaaagcattcctccaagtgttttatttcttacttagtggtgcatttttttaaataatagtttcGATACAGAAAACAGTCATTACTTGATGAGGACTACATTGACAGTCTGGGTTCCTGGTATCCTGAAGTACTCAGATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304997 lncRNA upstream 28288 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305000 lncRNA upstream 66766 19660638 ~ 19666585 (+) True G257671
TU304947 lncRNA upstream 251776 19481110 ~ 19481575 (+) True G257623
TU304932 lncRNA upstream 262433 19466692 ~ 19470918 (+) True G257608
TU304933 lncRNA upstream 267124 19465730 ~ 19466227 (+) True G257609
TU305053 lncRNA downstream 8272 19743485 ~ 19745946 (+) True G257713
TU305143 lncRNA downstream 272739 20007952 ~ 20008154 (+) True G257781
TU305133 lncRNA downstream 273426 20008639 ~ 20010104 (+) True G257774
TU305175 lncRNA downstream 323038 20058251 ~ 20070248 (+) False LOC113530699
TU305176 lncRNA downstream 323038 20058251 ~ 20070248 (+) True LOC113530699
XM_026920204.2 mRNA upstream 100171 19625529 ~ 19633180 (+) False si:ch73-206d17.1
XM_034311885.1 mRNA upstream 268015 19439436 ~ 19465336 (+) True ptpn22
XM_034311659.1 mRNA upstream 401377 19322799 ~ 19331974 (+) True atp6ap1b
XM_026920185.2 mRNA upstream 423517 19295519 ~ 19309834 (+) True itih6
XM_026920800.2 mRNA downstream 49358 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 104498 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA downstream 105640 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA downstream 105640 19840853 ~ 19848661 (+) False zbtb48
XM_034311906.1 mRNA downstream 106482 19841695 ~ 19848661 (+) False zbtb48
TU304946 other upstream 254456 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 700363 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 821637 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2612410 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3224971 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 655596 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 775031 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1167892 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1167934 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1493107 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile