RNA id: TU305133


Basic Information

Item Value
RNA id TU305133
length 1375
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G257774
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20008639 ~ 20010104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTACAGTACAAACTCCTGAAGAGTAAATCTGCTTAAAAATGGTGTTttattcacattatttattatcGCTCTCATATTGACATCCTAATACTCACATAAATACTTTAAACAATTGTATTTGTACTCATATATTTGTCTGCTATAAATGAATCGTGAAAAAATGAAGAGGGCTCGTTGTTGACGTGGTTGTCACATCCAAAAAACAAGAATAGAGTGCAACAGGAATCTCTAACATGTCTAATTTGTCATGGAGGCACCTCTTCCCAAGTGCCTGCATACATTCCAAGTACCCTAGCTCAAATCTGGAAGTGTTTTCAAGCGGGCATAATGAATAAACAGAGTTGGAATCATTGCTTTTTATGGTGCGCTTGATCGCCTCCAGGTTTTGCCCTTTTGCAAGCTGGCAAATGTGTTCATTATGAGcaatcacatgattcattttcctAGTGCAGGGTGTTATGGTGCGTTATCTATTGTGTGATCATTAGCAGTCAACAAAGCAGAGGTGTGTACATTAGAAATGATAATGACAACAGCATCTGTCAGGGTCAGTGAGTCCATAGCCAGCGCCTTTACTCAGATTGAAAAATATACGTCCTCTGCTAATAGcagtaaatttttttcaaataatgaaTCCGTATCATAGATATGAGTCAGATTTCAAAGCAACGTTTGTCTTATCATATATCTTTGTATACATCTACTGTAGATTATATATGTATCACAAAATAAATTCTGTTCAATATCATATACTTAAAACcccaataaaacaaaaagataaCTTTTGTTGCATATGAAAATACTCAGAATTTCTTTTAGCCTGCCTACAGCTGAATTAAAGATCCACATTGTCTTTTCATTCCAAGCTGTGATAAGAATTGCCTCCGACTGTCTTTTACCGACGGCGTAAAACAGATGTGCCACAGTCAGCGCAGTGGTTCAGTCATCTCATACTGAAGCATTTGCAGAGCAGTTAGCTGCCTCTGGCTGTCCACTATTTGATTCAGTGTTGGATGGCAGTCCAAAAGAAAGCAGTCTTAGGTGGGAGGAAAAACGAAGGGAGGCTATACCCCCAACAGCATGCCCATGAAATCCGAGCCGTTCTGTATCGTGATTGAAGCTCCTGCTGCATTGTCCACAAATATGGAGGTGTACTGACCAGCCGGAGCTCCAGCAATCCGTGAACATACACTGTGAATATCTTGCTGTTGCTCTCCAAGCCAACGATCATCTCCAAAGACCTACATCAatgcattaataataagaaGCATTAAGAAAAGTGATTTTCAGAAATCTGTCACAGTCTGGTTAGGAGGCAAATCTATCAAAGTTCCAGCAAAGAAGCTGTACGATATaagaaaaatggcaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305143 lncRNA upstream 485 20007952 ~ 20008154 (+) True G257781
TU305053 lncRNA upstream 262693 19743485 ~ 19745946 (+) True G257713
TU305050 lncRNA upstream 273426 19733351 ~ 19735213 (+) True G257710
TU304997 lncRNA upstream 303576 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305000 lncRNA upstream 342054 19660638 ~ 19666585 (+) True G257671
TU305175 lncRNA downstream 48147 20058251 ~ 20070248 (+) False LOC113530699
TU305176 lncRNA downstream 48147 20058251 ~ 20070248 (+) True LOC113530699
XR_003403167.2 lncRNA downstream 48312 20058416 ~ 20070248 (+) False LOC113530699
TU305173 lncRNA downstream 48388 20058492 ~ 20070248 (+) False LOC113530699
TU305174 lncRNA downstream 48388 20058492 ~ 20070248 (+) False LOC113530699
XM_026921359.2 mRNA upstream 43226 19900014 ~ 19965413 (+) True syt6a
XM_034311905.1 mRNA upstream 159977 19839711 ~ 19848662 (+) False zbtb48
XM_026921316.2 mRNA downstream 27317 20037421 ~ 20043667 (+) True sdf4
XM_026920527.2 mRNA downstream 109846 20119950 ~ 20127658 (+) True ccnt1
XM_034311543.1 mRNA downstream 119602 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 137074 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 138548 20148652 ~ 20155096 (+) False LOC113530927
TU304946 other upstream 529744 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 975651 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1096925 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2887698 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3500259 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 380705 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 500140 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 893001 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 893043 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1218216 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile