Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000701 |
| length | 1072 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 8 |
| gene id | XLOC_000411 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 34695373 ~ 34706903 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006366 | transcription by RNA polymerase II | biological_process |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005674 | transcription factor TFIIF complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003678 | DNA helicase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004386 | helicase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040625-131 | Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F2 (general transcription factor IIF subunit 2). |
| ensembl_id | ENSDART00000077744 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003085 | lncRNA | upstream | 240926 | 34450659 ~ 34454447 (+) | True | XLOC_000408 |
| TCONS_00003084 | lncRNA | upstream | 461317 | 34231603 ~ 34234056 (+) | False | XLOC_000404 |
| TCONS_00002851 | lncRNA | upstream | 463246 | 34231738 ~ 34232127 (+) | True | XLOC_000404 |
| TCONS_00000683 | lncRNA | upstream | 993457 | 33697341 ~ 33701916 (+) | True | XLOC_000399 |
| TCONS_00002850 | lncRNA | upstream | 1176550 | 33517802 ~ 33518823 (+) | True | XLOC_000394 |
| TCONS_00002852 | lncRNA | downstream | 150605 | 34857368 ~ 34859323 (+) | False | XLOC_000414 |
| TCONS_00002853 | lncRNA | downstream | 150605 | 34857368 ~ 34861057 (+) | False | XLOC_000414 |
| TCONS_00002854 | lncRNA | downstream | 152043 | 34858806 ~ 34859323 (+) | True | XLOC_000414 |
| TCONS_00003086 | lncRNA | downstream | 327531 | 35034294 ~ 35093512 (+) | False | XLOC_000415 |
| TCONS_00003087 | lncRNA | downstream | 369704 | 35076467 ~ 35093512 (+) | True | XLOC_000415 |
| TCONS_00000698 | mRNA | upstream | 1008 | 34685405 ~ 34694365 (+) | False | XLOC_000410 |
| TCONS_00000700 | mRNA | upstream | 1014 | 34685470 ~ 34694359 (+) | True | XLOC_000410 |
| TCONS_00000697 | mRNA | upstream | 136569 | 34527213 ~ 34558804 (+) | True | XLOC_000409 |
| TCONS_00000696 | mRNA | upstream | 138650 | 34496855 ~ 34556723 (+) | False | XLOC_000409 |
| TCONS_00000694 | mRNA | upstream | 397970 | 34295925 ~ 34297403 (+) | True | XLOC_000406 |
| TCONS_00000707 | mRNA | downstream | 56776 | 34763539 ~ 34786959 (+) | False | XLOC_000413 |
| TCONS_00000708 | mRNA | downstream | 56780 | 34763543 ~ 34807059 (+) | True | XLOC_000413 |
| TCONS_00000709 | mRNA | downstream | 487691 | 35194454 ~ 35234700 (+) | True | XLOC_000416 |
| TCONS_00000711 | mRNA | downstream | 766456 | 35473219 ~ 35491005 (+) | False | XLOC_000417 |
| TCONS_00000710 | mRNA | downstream | 766456 | 35473219 ~ 35491005 (+) | False | XLOC_000417 |
| TCONS_00000699 | other | upstream | 6731 | 34685445 ~ 34688642 (+) | False | XLOC_000410 |
| TCONS_00000695 | other | upstream | 295019 | 34400240 ~ 34400354 (+) | True | XLOC_000407 |
| TCONS_00000688 | other | upstream | 572401 | 34122880 ~ 34122972 (+) | True | XLOC_000403 |
| TCONS_00000685 | other | upstream | 728100 | 33967157 ~ 33967273 (+) | True | XLOC_000401 |
| TCONS_00000684 | other | upstream | 960239 | 33735018 ~ 33735134 (+) | True | XLOC_000400 |
| TCONS_00000714 | other | downstream | 788141 | 35494904 ~ 35515273 (+) | False | XLOC_000418 |
| TCONS_00000717 | other | downstream | 1084129 | 35790892 ~ 35803084 (+) | True | XLOC_000419 |
| TCONS_00000728 | other | downstream | 1447498 | 36154261 ~ 36154377 (+) | True | XLOC_000425 |
| TCONS_00000735 | other | downstream | 1958780 | 36665543 ~ 36690899 (+) | False | XLOC_000428 |
| TCONS_00000740 | other | downstream | 2021534 | 36728297 ~ 36746569 (+) | True | XLOC_000429 |
