RNA id: TU305178


Basic Information

Item Value
RNA id TU305178
length 2484
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G257802
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20101008 ~ 20104040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCAACACAGTTTCCGTTTTATTTCCAAAGAAAGCAACAAATTCATGTTGCCTACAAGTAATGTATTAGCACTCATTCCCCAAGCGATAAGGCTTTTGGAATATACATCAGaacattttctataaataagGTGCAACATTTCCTCCACAAAAAAAGGCTCTGTTAAATATGGCTATTGATCGGACACCAGTGCAGAAGGTTCTGTAAAAGTCTGTAGACAGCTGAGAAAATCAGTGCACAAGGTGCTCAGGATGTGCCAACTGTTGTTATTGTGTCAGGGTCCTTTGATGAATTCTTTGTGGCATCCTCATCTCCTGCTGTTTCAGATACCTCCGACACAGCctgggggtaaaaaaaaaaaaaaaaagaaagagtgtcTTTAATAGATCCTGGATGTTCAAGGTCAGAGCCAGTCTAGCGTCTTTGAAAGGACAGAATGGAATAACTTGATGgtgtattattaaaaatcatattgCTGTAAATCTCCAAAGCATGTCCTTAGCATGTAAACTGCACTTTTCCAAGCTATAAAACTTGTCAtgaattgcaaaaaaaaaacaaaaaaaaaagttaacatttgTTGTGCTTGCAttatatgaacatttatgaaatgAGACAGTGTGACTGGCATCATTTTAAACTCACTGAATTCAAATGCGCAGTCCATTAGAAAGCctactttttaaagaaatcacaCCAGATGAACAGCAGACAACCCTctctctttataccacagcgttgttgaattcttgaatctgactcgccagaaggtgttgattaatattctataacagcagatatAAAACTAGTTAGGCTGCAAAAGCAAAATCACAGGCTtatgttaatgtgctcattctaatatgttattgtttctatagcaattACTTCCGTAGTAACTTCTGCAGTGACTCGcatggcggacgctccacataaacattcttaaaaatcctgtgattgttgatatggtgacattttcagtaaggagatgtttaagatttttgtaaaggagtctccagtgtctgcgCTTTGTatcaggtaaagctgtaacagtaTCTGTTTCctgagctgtatttttttttgtcttattaactcagagagaaaaaaagctgaGGGAACTtcttacagctgctataattcaagttataacaggaacttgtttcatggatgatctataacattaaatgtaagtataaacaaataaaatgtatgacgtgttgttcattaataaaatgtaatcattggcaaacagCTACAGCATAAGAGGGATAAAACATGataggacgtgctgttattggaaaacattCAACTTtttggtggtaacagtaactctgctttgctcCGGGCACATTACGGCACATTACACCACTTAACTGttgaatatttttctataacagcatgtccggaagagttttattcctttcgTAGTGCACTGAGAAAGTACTGAAGGCTAAACGTTATGCttttaaatcaatataaatCATACGTTCTTGCTATTTCTTTAACCAAATAGGGTTCAGTGCTGCTACAGCTAATATAAAGATGCGAACAGATGatttaccaaaaaaatatattgctaCAATTGGAAAATAAACCCAGACTGAATCAAGAACATTGTATGATTGCTGTAAATCAACATTTACCTGGTCTGCTGTGGACATGTCTTCTGTCTCTGAGAGATCGGGGTCCTGTCCTGAGGTCAAGATGTCCATAGGAGCCTCAGCAATGGCGCGGATGGTTTGGTCTTCCAGCGCCAGGGCAGTGTCAAAGAGCAGCGGTGATGGAGGGCACTGCATCTCCTCATCACCTACCACATCCAGATCCTGTATTCCTGTCATTCAACAGACATCCTAGATGACCAACGACCCCAAATGAAGTTAATCGTACATCGCTGAACTCGAGGGGCAGGCTCTCTGTGGGCTGAAGCTCGGCAGCGCTCAGGTACATGTCTGTTGGTGCTAATGATAGCTGCTCCGGCGCCAGTGGCTCCTGCTCAGGCTGGTACATGGGGGGAGGCAGGGAGAGATGCAGCGGGCATCGTGGCTCCTCTGACTGGCCCATGTGCACCGGCCTGTCACAGGGCACGTCCTTAAGGCCTGGGCACATCTTAAACAACACCTGGCTACTGTCTTGGTAAATATCTGTTGGGATCGTTaaagaaaactaaaagaaaacaGCAGATACAAATGTAGCACTGTGGGAAAATTTTTAATCATCAAAATGTCTCTTCTAACTGAACTGACTTTTCCCATATAGCAAGTTCTGGGAAAGTCAACAGACCATCTGAAGACTTCGATTTTGGCCGCTGTTTGAAACCAACAGCTACAGCAAGTTGTTGGCCTTGATTCAGGGCGCAGAGActtacaggagaaggggttATAACCACAAACGTATTACAAGTGTGCATGCTTGACTCTGAGAAAGATACGAGACACGCAGTGTCGGGTCATTGGCAGACAGGGGTTTGAACACCGCGTCCCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305196 lncRNA upstream 1510 20099230 ~ 20099498 (+) True G257814
XR_003403167.2 lncRNA upstream 30760 20058416 ~ 20070248 (+) False LOC113530699
TU305179 lncRNA downstream 4350 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA downstream 4350 20108390 ~ 20109226 (+) True G257803
TU305574 lncRNA downstream 265955 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA downstream 265955 20369995 ~ 20379334 (+) False G258097
TU305640 lncRNA downstream 463750 20567790 ~ 20576789 (+) True G258156
XM_026921316.2 mRNA upstream 57341 20037421 ~ 20043667 (+) True sdf4
XM_026921359.2 mRNA upstream 135595 19900014 ~ 19965413 (+) True syt6a
XM_026920864.2 mRNA upstream 252347 19840853 ~ 19848661 (+) True zbtb48
XM_026920527.2 mRNA downstream 15910 20119950 ~ 20127658 (+) True ccnt1
XM_034311543.1 mRNA downstream 25666 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 43138 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 44612 20148652 ~ 20155096 (+) False LOC113530927
XM_026921333.2 mRNA downstream 44612 20148652 ~ 20150405 (+) False LOC113530927
TU304946 other upstream 622113 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1068020 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1189294 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2980067 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3592628 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 286769 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 406204 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 799065 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 799107 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1124280 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043052 False 804 lncRNA 0.51 3 NC_007134.7 24606253 ~ 24609203 (+)