RNA id: TU305577


Basic Information

Item Value
RNA id TU305577
length 1603
lncRNA type read_through
GC content 0.43
exon number 3
gene id G258097
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20369995 ~ 20386813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgagagagagaaataacgGTAAGggcaagtgagagagagagagagagagagagagagagagagagagagagaagattgtAGCACTTCCAATAAGAGTGGGAGTCCCCATAACGTTGATTTAAATATTATCCAGGTGACCACAGTAAGTCAAGGTCATAAAATTGTAATGTCATGACGGTCCTGCAAAGCGCTGGGGGTGGATTTTATGATCTGCAAATATAATGTGCTGGTGCAGTAAAGATGCATTAAAAAGCGGAGTGGAGGAAGGCTAATCCACATACCCAGGCTTGCAATGTGCTGGCCTCACTGGCGCGCTCTGCGGGCTGTTATAGAGGCAGGAAGCCTGTTTAATGGCTCTGGAAAAACACAACGCTTACACACCAGGCAGTCGACATGGATGTACGATAagcatcaacaacaacaacaacagcagcaacaacaacaacaatcaatCAATACGTGGATCATATCATATACAGATAAACAGATTTCAAGAAAGGCCGAAAAGGCTATGCAGCTAACAGCAGGCACTATGCGCTAAAGCCTGAAGCCTTTCAGGATCCCCGAACTACAGACTGTTTATCTTCAAACGGACGCACCTATTCGGATTATGTCTACTGTTCGGCGGTCGACATCAGGGACAAGCAGCAGAATGCATCTTCCCCCGAGTCTGAGATCGTTTCTTCCGGAAAGCACAAAGACGAGAAGGCTGAACTGGACCCAAGTAAGTTAAAAGCCATTCTTGTTTACAGCTGCATTTGAGACGCCTCGGGTTTATTGCGTTCGCTTGGTGGTTGGCTGTGTCCTCCGTCGTAAAACCAAGTTCTAAAGCCTTTCATCTGGCCCCTGCCGTTCTCGGCTGGCTCAAGTCTGCTTTTGGTGCTGTCCATAGAAGACAAACGCCGTAAGACAGGGCTGTAAAACGGGTAGCGGGTTATAAAACGGTCTCCTCGAAGGACAGGTCTGGAGAGGCAGTGAATTCTGAGCGAACACTGAATCTCAGTTAAAATTACAAGGTATAATTAGATAATCCCGTGGCCAATTGGATCCACGCGCGCTCCACCAGAAAGAAGCGATGCCCTTACACAAAATATCAAACACTTGAACTCGAAAAGGAATTTTTATTCAATATGTATCTAACGAGAGACCGGCGATACGAGGTGGCCAGAGTGCTGAACCTGACGGAACGACAGGTCAAAATCTGGTTTCAGAACCGAcgaatgaagatgaagaaaatgaaCAAGGAAAAGAGCGACAGCAAAGAATAAAACGTCCAAAACTTTTACTGAATACAGACTGAAGGAAAGTTTAGAAATTTGTCTTAAGTCTTAATAGTTATCTCCTTCCTTGCAACAGGAACAGAAAACATCAAGACACAATGATAGTGCTCTTAATACGGTGTAATTATGATTTCTTGTGACTGCAATTTTACCAACCTTTGTTTGTATTAACACTATAAGTAATTGCACAACTCAGCCTATTTGGATTTAGATTACGattctttattttacattctttaaGAAATGCCCCCGGCGTAGAAGCAAGACAATACTTGAACTCCTCAACTTCTAAACTTcgtaatttataatttttaccTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305179 lncRNA upstream 260769 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 260769 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 265955 20101008 ~ 20104040 (+) True G257802
TU305196 lncRNA upstream 270497 20099230 ~ 20099498 (+) True G257814
TU305195 lncRNA upstream 303987 20065477 ~ 20066008 (+) True G257813
TU305640 lncRNA downstream 188456 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 232207 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 284348 20663682 ~ 20680938 (+) True G258273
TU305795 lncRNA downstream 303036 20682370 ~ 20756538 (+) False G258275
XR_004579728.1 lncRNA downstream 317651 20696985 ~ 20699668 (+) True LOC117599265
XM_026920335.2 mRNA upstream 8716 20358172 ~ 20361279 (+) True hoxc11a
XM_026920252.2 mRNA upstream 19066 20347159 ~ 20350929 (+) True hoxc12a
XM_026920340.2 mRNA upstream 29448 20336971 ~ 20340547 (+) True hoxc13a
XM_026921439.2 mRNA upstream 101208 20232088 ~ 20268787 (+) True rarga
XM_026920559.2 mRNA downstream 3846 20383180 ~ 20386828 (+) False hoxc8a
XM_034311743.1 mRNA downstream 9823 20389157 ~ 20431053 (+) False hoxc3a
XM_034311740.1 mRNA downstream 11080 20390414 ~ 20431053 (+) True hoxc3a
XM_026920560.2 mRNA downstream 15599 20394933 ~ 20398744 (+) True hoxc6a
XM_026920561.2 mRNA downstream 20362 20399696 ~ 20402543 (+) True hoxc5a
TU304946 other upstream 891100 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1337007 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1458281 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 3249054 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3861615 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 11475 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 130910 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 523771 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 523813 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 848986 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU68928 True 254 lncRNA 0.37 1 CI01000010 103911 ~ 104164 (+)
eurasian perch (Perca fluviatilis) TU68928 True 2396 lncRNA 0.45 5 NC_053116.1 20862226 ~ 20952782 (-)
striped catfish (Pangasianodon hypophthalmus) TU68928 True 729 lncRNA 0.34 5 NC_047598.1 1946349 ~ 1949582 (-)