RNA id: XM_034312052.1


Basic Information

Item Value
RNA id XM_034312052.1
length 2401
RNA type mRNA
GC content 0.45
exon number 4
gene id nfe2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20518425 ~ 20525464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgaaacagagagagagagagagagagagagaaagagagagagagagagaggcagacagacagacagaggtcGCTCACATGTACTTCTCAACTTCAGAGCTATCAGTTAAAAAATGAATACCAAACAATTAATGACTGATTTGTGAAGCTCTGAACTTCGGCTGAACTTCAGGTTCAACATTTTGGCTCGCAGGATAATATGATAGCTCGAGATATTTTACCTGAACTCATGGGTCCAAAGAAATGCTACTAAGAGGTGGACACTGCATCTGGGGCCTTTCCTGAATGTGTTCAACCATAAACAGCGCTCTTCCCTTTAGTTTCAGTTGTGAGGGACCAGTAAACTCTAACAGACTTCATGGGGGAGTGTCGATGTCTAGCACTCACAGATTCAGTGCGAGTGGCAGGGTCTGGGCCAATTATTCTCAACAATCAGAGATGGACTGGACCTGGCAGGAACTAATGGCAATCACAGAACTGCAGGTCAGTGAATTTGAGGTCCCCAATGAGAATCCATTTGAGGCTGGTCCATACATCTCCATGGAGCCAATGGTGCATTATGGGAGTTGTGGAATGAACCTGGCAGAACCTAACCCACCCACCTGTCAGGCAAGCCCTGCTGCTGCTTTTGAAGCTGGGTATGCTGATGCAATATCCCCGTACCAACGCTTGAACCCAAACATGGAGATGCACTATGGACACAGCGGGTGCCAGGCTACCAGATTACCACCAAATGCACCACCTCTTCAACCCCCACTCATGAGCCTGTTGGATCCCATGAACATGCCGAACACCAATCAGGGACAGGGGAAAAACTGCAACGGACACCCAGACGATCTTGAGTCAGACTCTGGTCTTTCTTTGGGCTCAAGCCCACCACTTGCCTCACCTGAGAACGAAGTCCATGGGGCACTTACATATTTACCCCGAGACAGTTATACTAATGGTGACATAGACTGCATTGGTGACCCATGTCACATGAGACCAAACATAAATGCTCCTGTGGATTATTCACACACGTTTGGGGCCTACTCCGGACATTCCTACTTTCCAGTTGCACCAAACCCACAACATGCCCAGCAGCATGTGCCTCATTCACATCAACACATAACAGCCATGAAACAGCAGCTTTTTCCTGCTACTCTGCATGATCCACACGCAAGCCACACAAGCACACCAAGAGCAGTCTCTTTCCAGTCACCACACCCCAAAACAAAAGAGGTTGGTGTCTCTAGCCCTCTCACCAGGGACGAGCGGAGAGCAGTAGCACTCCAAATCCCTTTTCCGCTTGACAAGATAGTCAATCTGCCCGTAGATGACTTCAACGAGCTATTGAGCAGACATGCACTAAGCGATGCCCAGCTCACACTTGTGCGCGACATCCGCCGCCGCGGCAAGAATAAGGTGGCGGCGCAGAACTGCCGGAAGAGGAAGTTGGAAAACATCGTGCACCTGGAGCATGAGCTGGGCCAGCTGAGGGCCCGCAGGGAACATCTAACACGAGAGAGGGTAGAGTTCCAACAAAATCTCACCATGCTGAAGTGTCGTCTCTCCGAGCTTTATGCTAAAGTATTCTCCCAGTTACGGGATGAAGAAGGACACCCGTATTCTCTGGAGGACTATTCGCTCCAACAAAGTAATGATGGTAACCTTTACCTCCTGCAACGAAACAACTCGCTGGATGGGGAATAAACGAGGGTCTTACAATTAAGTGCATGGTTAAAAGTTGGATGTCCCAAAAACATTAGATATgctataaatgtttttatgggACATTAATGTAGCAAACCCAAAATCATCCTCAGGGCCACAGCCAAAGACTACACAGCATCCTGGCTACTTTCCTTAGCAAAAATAAAGTGGTCCAACTCTCATGATACTATGTACATATGATTAAGCATTAACTCACAGGAATCATGTTTCGCCActttaaaagctttatttaCATAGTAAAAACCAGTTAATTACATAGTAAAAAGATTTTATTCCCACATCATCTCTTTGGtcctaaaacaaaacagaaaagacaataaaacatcAGCATGTAATTATTTACATCTCAAGCATCACAATGGAGGGAAAGAATTACCTTTGCAGTGCCTGAAGAAAACAGGCAAAAATCATCCATTCAGGATCAATGCTTTGCATCAAATTCCTAGAAGGCAGACCAAAAAAAATTGCCAGTCAATACACAGACAAGAACACTGCATGCATTAATCTGAAGGGACAGAATCGAGTTACAATGTTAAGCAATGTATGTTTGTAACAGTTCGTTCTTCTCGCTGTAGTtactttcctgtttttttttttttttttttgtttaacattaGGACACTGAATGCAAAGTTCAGAATACTGTACTGCAActacaatgaataaaatgagtTGTGTCCAGTGGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09039 NFE2; nuclear factor erythroid 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305681 lncRNA downstream 2632 20511166 ~ 20516713 (-) True G258189
TU305741 lncRNA downstream 31935 20470193 ~ 20487410 (-) True G258232
TU305692 lncRNA downstream 117085 20376338 ~ 20402260 (-) True G258198
XR_004579708.1 lncRNA downstream 148045 20369449 ~ 20371300 (-) False LOC117599243
TU305773 lncRNA upstream 64294 20589758 ~ 20593161 (-) True G258258
TU305785 lncRNA upstream 84847 20610311 ~ 20611059 (-) True G258268
TU305953 lncRNA upstream 250685 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 358335 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 375814 20901278 ~ 20902757 (-) True G258427
XM_026920991.2 mRNA downstream 9637 20499278 ~ 20509708 (-) False cbx5
XM_026920990.2 mRNA downstream 9639 20499278 ~ 20509706 (-) True cbx5
XM_034312053.1 mRNA downstream 10649 20499278 ~ 20508696 (-) False cbx5
XM_034311842.1 mRNA downstream 232132 20274622 ~ 20287213 (-) False calcoco1a
XM_026920639.2 mRNA downstream 232133 20274622 ~ 20287212 (-) True calcoco1a
XM_026921338.2 mRNA upstream 32140 20557604 ~ 20566595 (-) True znf740b
XM_026921339.2 mRNA upstream 34651 20560115 ~ 20566597 (-) False znf740b
XM_034312135.1 mRNA upstream 34651 20560115 ~ 20566596 (-) False znf740b
XM_034312136.1 mRNA upstream 34651 20560115 ~ 20566315 (-) False znf740b
XM_026920876.2 mRNA upstream 42325 20567789 ~ 20577934 (-) True csad
TU305550 other downstream 247438 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 399396 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 410135 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 415434 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 897785 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 305364 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 643522 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 829162 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1403711 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1920566 22446030 ~ 22449427 (-) True G259306

Expression Profile