RNA id: XR_004579709.1


Basic Information

Item Value
RNA id XR_004579709.1
length 458
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC117599243
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20364055 ~ 20373180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGCCCACCGTGGCTATAACCGTTTAGTTCATTTACAATGCCATTTGCGAAGACTTCACTGCACAGGGTGTAATTTAACGGCAATTGTCGCCCTTGATGAAGCCGAACTGACGTAATCAAGGCAGTTTCTTGTTGTCGAGCCAGGAAGCTCAATCCCAACAACATGAAACTACCTAAACCACGCACCAGCTGCGCGTGACGACGTTATTCACCGGAGAAGACAAAATAACATTTCGCAAAACAACGTTGTGTTTTTCCAGAGCCATTAAACAGGCTTCCTGCCTCTATAACAGCCCGCAGAGCGCGCCAGTGAGGCCAGCACATTGCAAGCCTGGTTGAAGTTGTAGCCCGTTAGCTCCCGGACCCGACTTTCCCTGTTAAGCTTCTTCAGTTTCATCCTTCTGTTCTGAAACCAAATCttgacctgtctgtctgtgaggTTGATACTCTTGCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403139.2 lncRNA downstream 37838 20314362 ~ 20331611 (-) True LOC113530344
TU305460 lncRNA downstream 225200 20144025 ~ 20144249 (-) True G258003
TU305425 lncRNA downstream 240337 20128905 ~ 20129112 (-) True G257980
XR_003403186.2 lncRNA downstream 311543 20051421 ~ 20057906 (-) True LOC113530857
TU305265 lncRNA downstream 754770 19611920 ~ 19614679 (-) True G257880
TU305692 lncRNA upstream 5038 20376338 ~ 20402260 (-) True G258198
TU305741 lncRNA upstream 98893 20470193 ~ 20487410 (-) True G258232
TU305681 lncRNA upstream 139866 20511166 ~ 20516713 (-) True G258189
TU305676 lncRNA upstream 147125 20518425 ~ 20520203 (-) False nfe2
TU305751 lncRNA upstream 151252 20522552 ~ 20523645 (-) True G258242
XM_034311842.1 mRNA downstream 82236 20274622 ~ 20287213 (-) False calcoco1a
XM_026920639.2 mRNA downstream 82237 20274622 ~ 20287212 (-) True calcoco1a
XM_026920084.2 mRNA downstream 147336 20205272 ~ 20222113 (-) True nr1d4a
XM_026921228.2 mRNA downstream 167704 20198866 ~ 20201745 (-) True mfsd5
XM_026921330.2 mRNA downstream 189759 20155949 ~ 20179690 (-) True jph2
XM_026920991.2 mRNA upstream 127978 20499278 ~ 20509708 (-) False cbx5
XM_026920990.2 mRNA upstream 127978 20499278 ~ 20509706 (-) True cbx5
XM_034312053.1 mRNA upstream 127978 20499278 ~ 20508696 (-) False cbx5
XM_026920986.2 mRNA upstream 148045 20519345 ~ 20525464 (-) False nfe2
XM_034312052.1 mRNA upstream 148045 20519345 ~ 20525464 (-) True nfe2
TU305550 other downstream 97542 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 249500 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 260239 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 265538 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 747889 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 459528 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 797686 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 983326 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1557875 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 2074730 22446030 ~ 22449427 (-) True G259306

Expression Profile