RNA id: TU305692


Basic Information

Item Value
RNA id TU305692
length 5271
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G258198
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20376338 ~ 20402260 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGTACAGTATatgagaaatattttttctttttttgttgcatatttgtaaatgtttctcGCTAAAAACGAACTGAATAACGATTGAAAGAGTCTATCTCGTAataagtttatttaaattattaggCTGCACCAAccacatttgattttttatgcattgcacatGTAACATTTGTAAAATGTAGATTAAGAaactacatttatacatatataggGGCAACTCTTGAACTCTTTGAGTATTTAGCATTACACTGGGCAAACTTTCTGTTACTGAGCTGCATCGCATTGATGCTAATACAGCTTTGAACCCAAACAGCCttttttactattaaaaaaaattccaagtcTTCTCTTTGAGCAGTGAATTGAAATTACTCACAACAGGTACATAAAGCATGACTATCTAACGTGTTATTGGAGCATACAATGAGTAATATGACATTTTGTTGCGTGCAGTTCATCACTACAGACACATCCTATAAACAGATATATCCTATCAGACATATAAACATAAAGTACAGAAGGCAAACCAAATAATACTGAATTAcgtaaaatacaataaaatatctCTTTAAATAATTAGAATTGCATGTTCACTTGTTAACCTACTGTAAGTTCTGGATGGGTGTGACCCAAATAAGCTCCTCCCCGTTGTCAGTGTGTCGTCAGCTGAACAAGTTGTGAGGACATATGTTACATACTTACATTAAATTAAGATTGTGATCTATCAGTTATAATATGTAATTGCCAGTTTGGAACAGCATGAACTTtgaaacatttatattaatgaactctTGTTTTCATCTTGTTTGCAGGTATATTTGCTATACCACCTTATCATTATAGTGCACCTTTAACTTTCAGCTTTGAGTCCTTCTTCCACTTCATGCGACGGTTCTGGAACCAAATTTTAATTTGTCTCTCGTTCAGGCAGAGGTTATTGGCAATCTCGATTCGCCTGCGACGTGTGAGGTATCGGTTGAAATGGAACTCTTTCTCCAACTCCAGAGTCTGGTAGCGGGTGTAACTGGTTCGTGACCTTTTACCGTCAGAGTCTGGGTAGAAAGATATTGGTTATATCCACGGAAAGGTCAAGCATTGTACCGATGGTCTTCCACAGTTATATTTAGGCCCACATTAATGGCATGCTGAGGTGTACTGCTACATAATCCTAAAGTAAGAtggatgaaatgaagaaaatataatatacaaacacTGGAGTCGATGAAGCTGATGACTCTGTATGTGGTTACAAATGTTTAAAGCACTTAATAAGATTAGGGAGGGAATGGAATTGGAAGCAGGACTCGACTGACAACTGTTCCCTACAAATTGcattgtttaaattttatattaaaaaaataataaattatgtttgATAGGACCGCTAGCTGAAGTGACTTCATTATTTGCATGGAGTAAAACCTCCAGCAGTGACAACAGCGCGCAGAACTACAGCTGCTGGTTGGTAGGCTACTTAGAAATGAATTGTACCTATTAAAACACCAAGATATAGGCAATAAATTGATCTAGGTTATCGAATATGTATGACCTGCCTTAATTTTAGTGCATAAGGCATACTTTCTCATTTTCACACTAATGATGCggaaaatatttttgtagaaaaaaaaggctACCATTAAGCTATACTAATATTAACCTAAATACGTCGTTTTCTATTTTTGATTCTCTTATCCAATTATATAGCAGTAAATTTGGCTGCAGATCACAGTAACGGGACAGGTTTACGAGCAATATGTGCCTTTGTTATAAAATTTACGACCGtgaattttattatttcctgtttttggccTATAAAACTCAAGAAAGAAAGTATGAAGGGACCAGACCGGCATGGGATGGAAAGATGAAAATATGAGATGCGCAGCTTTTGCTATTGTCGTAAAAAACATTAGATGCAACTTTACCGTGGCTAATGTGTAGCTTGGTCATCCACGGGTATATCTGCGGTTGCGATTGGGTCTGGCGCTCACTCGAGTTAGTTTGTTGTTTAATCGTTGGCGTGATCTCCATATCACCGGGCTGACTTTTGCTGCTGGGTTTTTCCGTAACTTCCATAATCATCTCTGCTTTTTGGCTCAACAGTCCTTGACTGAGCAGGTTGTACCCGCGTGTACTGACACGACTTGGGGAACCCATTGCTGCGCAAGCCTGGCGATGTGGTGGCGCGTTGATCCTGGCACTGTTGTGCTTATTCATCGCCTCCCGTTTCGGGGACTCGGAAACGACTTGAGATGCTAACGCTCCACTGAGATCGAGCCCTCCGTAAGCATAAGTGGACTGCTGAAACTCTGAGACAGCCCCATAGTTACCAAAAGTGCGCATGCTAAAGGAGGGTGCATCGTGCGTTTGGTTACAAAAAGAGTTTCCCACGTACGAGCTCATTCTACTTCGATACAAAGTAGCCTACAAGAAAGGAATCAACTAGAAGCACGTAGTCACACCAGAACCGATATGAACGTACAACATACATAGATTGTTTGTTGTTACTAatcttgtttattgtttttgatTTGTCTCCCTTGGAAGTTAAAGGGGCTTTGCCCTAAAAAGGGCAGGATTTATAGGTGGCGGAATATCGCTTGCTTTTTTCACGATGCAACGTGTAATGCCCAAATATGGGATGCTTAAATAGAATCACGTGCAACTGTTGGCCAGTCATAAATTGGCTTGATCCCCCCGAGATTATTGATGAATAAGGGAAACGTGTCCGATAACTTTGTGGTATGGAGACCATCTAAGCGTTTGGGCAAAAAGGCGCGAGACAGTTAGACAAGAGCGTCATCTGGTGTCTGATATTTGGCAAAGCTGAGACACGCACACCAGTACTATTGTCGCAATATCACGTTATAGTGAAATGCTGTTATATGTGCTTCTTGTCCTCAATTCACATATAACATCTTTTACTACTGTTAAGGAAGACAAGTGTTGATGTTCTGAAGTATTGAGATCTTGAAAGATTGGTTAACCTTGCTATAAacgtgttaatttttttaaccataagACAGGCTCGTTGTTACGCATGATTTTACGCTggcagaattttaaaataaaaatcacttgtAGTGGTATGCAGTGATTTTACAGCAGACCTGCTTCATTTATTGCCTGAAGCAGTCTTGCGATTCATACAAAACTTATCAACGCTCCACAGACAAATAAACTTTTCGTACTGTGTTTCCGATTTCAATTAGAAATACTGGGAAGAAAAATTCATTCTACTAAAATTACGTTTTGGTTCCAGAAAACAAAGTGTATACACGCGCCTTATCGTATCAGTTCTTCTCCTATGAGGCTGTGtctatgtaaaaataaaattcatctaGTAATCTTCAGAGCTATTGCCAAATTCTATTgattttgcataaaaataatttttccttAGCTCAAACATCACGCTTGTACGGAAACAATGATTGAGTCAAAACAGTCTTGTCTTTAAAACggtttattaaataatacacattttttgACAAAATATTAGACATATAATTGCAAAACAATGAATATCTTCATTTTCAAAGCagtttttattcactttaagACAACTTTATAAGCATGACTATAAGTGTGTGTTGAATTGGTATGAAATTAGCTGAACAGTAAATATTTAGCCAGTACAGCGGCGTTTTGTACATCCACGCACTGACGGGATGAAGTTATTAAAATCCATAAGAACGTAGGTAGCATGGATCATCCCACCAGTGTTGGTGCTAATTGAACGAGAACAAAGTAACACATGTGCATAGACTACACTTCCTTCACATTTGGAATGGTAATGGTACTTTGTTTGCAAACTCAACGAGAAAGCCCATTGACCCAATTAGTTTACAGTTTGTTTCATAGAGTAACTATTTACAAGCATAAAGAACACTATACTATTAAGACTGGTTGCCGAACAACAGCGTCTGTGATATTGCATCTAAACTGCCTAAAATGAGGCAAAACATATTCTTAATACAAAGAGTGATTAGCATAATTCTGCAtaccacctctctctctctttctctctctctctctctctctctgcacgtATTTGTGTGATAATGATCAGGAAATGAGTGTGAAGGTATAGCAGAATACACAGTCCATGCAGTTATAATTGCATTTCTGAGAGTTTATAGGTAGTTACGTTGCAGTTTAACAGGcgtttacaaataaaaacaaatctattAGTCTTTGTTTTTAACTTCTTCTGTCTCCTCCTGAttgctctgtttttcttccCCCTGGGCAGCACCAGTCGAATCTGTCCCAGTTACAGTCGAAGTCAGGTTGGTCTCTTTCTTCCACTTCATGCGGCGGTTCTGGAACCAAATTTTAATTTGGCGCTCTGTTAAACAAAGAGCATTGGCAATCTCTATCCGTCTGCGTCTGGTCAAGTAGCGATTGAAGTGGAACTCCTTTTCTAGCTCCAGGGTTTGGTATCGGGAGTAAATCTGTCGACCTCTCCTTCTGTCAGAGCCGTACCCAActcctgtttatttaaaaaaaaaaaaagaaaaaaaagtgcacagcAGATCAATGCGCGGGTTGTCTTGCAATACCAATTCACTTCAGGATTGCAGTAGGCTGCTTAATTCAGATGTTTCATTAGGTAACCTTACACGCTGTACTATAAATAGATACTATATTGCCCTAACATGTATTTCTCAGATGAGAGAAGACATTTGGCTTCGATTAGAAAGTATTATTATCTTATAGGGGCACTATTTCTCTCTGTAATTCATCTTTGTCGAGCATATAGCCTTCTCGCTTTGCTCTGTCTAGGTTTTTGCGCATCCTCTCCCcattgttattataattaacaATCCATCATTTATGTAAGTCGCTGATggttttattactttatattttgtaaCGTATTATTGGAAGAGACAGACTTTGttgaaatatgaataaaactgaattatttgTGGTACAGATGTAAGATTTTGGCTTGATATTTCTCACTGAAACTTTGGTTACcaccagttttaaataaatccgATTTGGGGCATCCCCCATAAAACGTAGTTTTAAAAAACTGAGGAGGTGGGAAACGGTGCTTGAACACTTGGCCACAACAGCGATTATATTCGGCAAGTGGTGGTGCATGCTTTCATGTCCCTCAATAAATTTTTATGAGGAAAAAATCTGATTGTTCGTGTCGTTAATAAAACTGCATTAGAGTATCCTGTAGTTATACATACAACCAGCACTCACCAAGCCAAAATGGAGGATCGAGGTGAAAAAGAGTTGTATGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305690 lncRNA downstream 3158 20364055 ~ 20373180 (-) True LOC117599243
XR_004579708.1 lncRNA downstream 5038 20369449 ~ 20371300 (-) False LOC117599243
XR_004579709.1 lncRNA downstream 5038 20369449 ~ 20371300 (-) False LOC117599243
XR_003403139.2 lncRNA downstream 44727 20314362 ~ 20331611 (-) True LOC113530344
TU305460 lncRNA downstream 232089 20144025 ~ 20144249 (-) True G258003
TU305741 lncRNA upstream 67933 20470193 ~ 20487410 (-) True G258232
TU305681 lncRNA upstream 108906 20511166 ~ 20516713 (-) True G258189
TU305676 lncRNA upstream 116165 20518425 ~ 20520203 (-) False nfe2
TU305751 lncRNA upstream 120292 20522552 ~ 20523645 (-) True G258242
TU305773 lncRNA upstream 187498 20589758 ~ 20593161 (-) True G258258
XM_034311842.1 mRNA downstream 89125 20274622 ~ 20287213 (-) False calcoco1a
XM_026920639.2 mRNA downstream 89126 20274622 ~ 20287212 (-) True calcoco1a
XM_026920084.2 mRNA downstream 154225 20205272 ~ 20222113 (-) True nr1d4a
XM_026921228.2 mRNA downstream 174593 20198866 ~ 20201745 (-) True mfsd5
XM_026921330.2 mRNA downstream 196648 20155949 ~ 20179690 (-) True jph2
XM_026920991.2 mRNA upstream 97018 20499278 ~ 20509708 (-) False cbx5
XM_026920990.2 mRNA upstream 97018 20499278 ~ 20509706 (-) True cbx5
XM_034312053.1 mRNA upstream 97018 20499278 ~ 20508696 (-) False cbx5
XM_026920986.2 mRNA upstream 117085 20519345 ~ 20525464 (-) False nfe2
XM_034312052.1 mRNA upstream 117085 20519345 ~ 20525464 (-) True nfe2
TU305550 other downstream 104431 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 256389 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 267128 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 272427 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 754778 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 428568 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 766726 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 952366 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1526915 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 2043770 22446030 ~ 22449427 (-) True G259306

Expression Profile