RNA id: TU305794


Basic Information

Item Value
RNA id TU305794
length 1811
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G258275
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20682370 ~ 20756538 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatacaatatgtatatttatcaGGACTTAGCCGTAATTTGGTCTACTTTACACTCCACATTCTGATAGAAGAGTAGAAACATCCACAATTGCACAAGTCTGATTTATTCTAAATGAACACGTGACCAGCGTAAAATCACTGATTCACGATCTTCTAGTTAGAGCAAACGTCCACTAATAAGAAGCTTGTGAAAAGCAGGCTTAGCTCTGTGACTCGGAGTCAAACACACATTGTACTAGGCACAAGTTTATGAGCATACACATCGATGTTAACCGTTCTTTTTAAGTGCTATCTACATCACTGACTGCACACCACCACTTACATAACACCAGCCTTCAATACATCATCCgaccttctctctttcttatttaatcattttgctGATGCAGCCTAAAAACATTTGACTATGTAGCGCCTAGGACTCTACATAAACAACATGCAACTGTCAGCACAATATCCAtgaacacgaacacacacacacacacacacacacacacacacacacacactttgagatTGGCATTGAAAAGCAACATAAcgaaaatatattaaaacataagTGCTAATATAGTCAAAGGCAcctgtaaataaacagtaaaaaatgaTTAATACATGAAGGCagtaaaaacaaagagaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccatatttGGACGGGATTAGGTTACATTTACAGGCGCTCCTCTGTGATTTCATTTCCATCTGGATCAGCCATGATGGCATAATAACCtactcttttattattattattatttcactttttttgcatcattGCTACTCTCTGTTTTAGTCATCTAGTGTGTTCCCAAATTAACAAATCAgaaaagcatgatgctgctgaTTCACATCTTGCAGAATATCATGGAACACTTAATCatctaggaaaataatgaatgagcAGTTGTATCTTTAATCATCGAACGTTAGACgctgacaaataaataaataaatataattgtaaACAATCCAATAGCGTTCCCAATATTAAAAGCactaaattatataaaacaacagaaactcTCTTTTCCTGTATTAATATAATTGATGTCTGGACACAAGAGCTTTATTTTAGAGGAGAAAagtaaaatgttattatagAAGCCACCCAGAGAAACTAATCCTGTCCAAATAGGGGTAAAGTTAATGATAATATCTTACAGTTGTTCAATAAGAGCATGATGAAAATTAAAGTGAGAATGTTTTGAACACCACTAATAGTGctaaagaacatttttataCAGTCACACCTTCCATTAAATCTTGAGAACAAAATGTAAACCGATGTCAACTACACATTAGATCAGACAATCTGACTTAACTCAATGGTTTAACTTAAGccgcattaaaataaacattactacataaaaacaaaactagtattaaaataatgattaagAAAACCTACAATAATTAAGTTCCACAATCAGGTTGCTCTGCTATGTGATGATGTGTCTCACAGGTAAGGGTACTGGTTGAGTTTCCTCTGGCTGAGGGGGTACGGCTGCCCGgggagctgctgctgttggcaGTGCGAGGCAGCTGATTGGCCCATCAGCCCCATAGCGCTGCTCTTCTGCAGCAGACTCAGAGAGGTGGAGTAAGGTCCGGCAGCACGCGTGTGCCtgatggaggaggaagaggaggaggaagagccGGCGGAGTTGTGCAGCTGATCCACAGCCTGCGACACTGAGGCCAGGGCGGCCGAGGCGGGGTAGGCGTACAggttgggggcggagctaaagAGCGAGGCCTCGTGCAGCCTGTAGGAGTGTGACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579729.1 lncRNA upstream 42734 20708115 ~ 20711958 (+) True LOC117599266
XR_004579728.1 lncRNA upstream 55024 20696985 ~ 20699668 (+) True LOC117599265
TU305792 lncRNA upstream 73754 20663682 ~ 20680938 (+) True G258273
TU305646 lncRNA upstream 97625 20611541 ~ 20657067 (+) True G258162
TU305640 lncRNA upstream 177903 20567790 ~ 20576789 (+) True G258156
TU305900 lncRNA downstream 29704 20786242 ~ 20790145 (+) True G258362
TU305939 lncRNA downstream 146609 20903147 ~ 20907459 (+) False ubxn10
XR_004579744.1 lncRNA downstream 152278 20908816 ~ 20911082 (+) True LOC117599282
TU305997 lncRNA downstream 219360 20975898 ~ 20976359 (+) True G258439
TU306029 lncRNA downstream 328844 21085382 ~ 21088222 (+) True G258460
XM_034311607.1 mRNA upstream 2821 20737744 ~ 20751871 (+) True march9
XM_026921277.2 mRNA upstream 24759 20719865 ~ 20729933 (+) True tspan31
XM_026920339.2 mRNA upstream 63078 20689186 ~ 20691614 (+) True LOC113530407
XM_026921045.2 mRNA upstream 67914 20684365 ~ 20686778 (+) True LOC113530755
XM_026921162.2 mRNA upstream 74622 20668113 ~ 20680070 (+) True pip4k2ca
XM_034312195.1 mRNA downstream 127154 20883692 ~ 20886509 (+) False LOC113530777
XM_026921092.2 mRNA downstream 127326 20883864 ~ 20886509 (+) True LOC113530777
XM_026920955.2 mRNA downstream 143584 20900122 ~ 20902771 (+) True cptp
XM_034312060.1 mRNA downstream 146567 20903105 ~ 20905396 (+) True ubxn10
XM_026921039.2 mRNA downstream 146569 20903107 ~ 20905396 (+) False ubxn10
XR_003403172.2 other upstream 240497 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 355978 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1275797 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1721704 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1842978 18879568 ~ 18911714 (+) False fmnl3
XR_004579743.1 other downstream 146567 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 146609 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 471782 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 781716 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1555268 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile