RNA id: TU305939


Basic Information

Item Value
RNA id TU305939
length 405
lncRNA type sense_over
GC content 0.51
exon number 2
gene id ubxn10
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20903105 ~ 20907459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCAAGGAGACGTTACTGTATTGGCAACTTGAATGACGCCACCGAAAATGTCCGCGTGCGTAATTTTATCACCCAGCGACAGAATAAAGCTTAAGGTGAATTTCAGTGAGACCTAATGGACTTACTGAAGTGTTCCTCGATGGCTCTGAGCACGGCCATGCTCTCCTCGCTGTCCACCATGTTGATGGCCAGACCTCGCTTCCCGAAGCGCCCCGTCCTGCCGATCCTGTGCAGGTAGGTCTCGTTGTCCGGGTTGCCGTCTTTGTCCAGGGGGAGGTCAAAGTTGATCACCACGGAAACCTGCTCTACGTCGATACCTGCTGAGCACAAATCAAGAGTTCGTTCCTTattcactatgtagtgcactatctGGGGGTCAGCAACTGAATTCTCATTGgacaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305900 lncRNA upstream 113002 20786242 ~ 20790145 (+) True G258362
TU305795 lncRNA upstream 146609 20682370 ~ 20756538 (+) False G258275
TU305794 lncRNA upstream 146609 20754692 ~ 20756538 (+) True G258275
XR_004579729.1 lncRNA upstream 191189 20708115 ~ 20711958 (+) True LOC117599266
XR_004579728.1 lncRNA upstream 203479 20696985 ~ 20699668 (+) True LOC117599265
XR_004579744.1 lncRNA downstream 1357 20908816 ~ 20911082 (+) True LOC117599282
TU305997 lncRNA downstream 68439 20975898 ~ 20976359 (+) True G258439
TU306029 lncRNA downstream 177923 21085382 ~ 21088222 (+) True G258460
TU306047 lncRNA downstream 185870 21093329 ~ 21093844 (+) True G258476
TU306054 lncRNA downstream 196255 21103714 ~ 21105101 (+) True G258483
XM_026920955.2 mRNA upstream 376 20900122 ~ 20902771 (+) True cptp
XM_034312195.1 mRNA upstream 16638 20883692 ~ 20886509 (+) False LOC113530777
XM_026921092.2 mRNA upstream 16638 20883864 ~ 20886509 (+) True LOC113530777
XM_034311607.1 mRNA upstream 151276 20737744 ~ 20751871 (+) True march9
XM_026921277.2 mRNA upstream 173214 20719865 ~ 20729933 (+) True tspan31
XM_026920705.2 mRNA downstream 11629 20919088 ~ 20953971 (+) True vwa5b1
XM_034311675.1 mRNA downstream 16673 20924132 ~ 20953971 (+) False vwa5b1
XM_026921097.2 mRNA downstream 90210 20997669 ~ 20999732 (+) True fam43b
XM_026920704.2 mRNA downstream 145211 21052670 ~ 21056506 (+) True LOC113530567
XM_034312061.1 mRNA downstream 145381 21052840 ~ 21056506 (+) False LOC113530567
XR_003403172.2 other upstream 388952 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 504433 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1424252 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1870159 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1991433 18879568 ~ 18911714 (+) False fmnl3
TU306101 other downstream 320861 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 630795 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1404347 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1764166 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2464288 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile