RNA id: TU305980


Basic Information

Item Value
RNA id TU305980
length 1456
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G258427
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20901278 ~ 20902757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttattttctatttggtTATTTGGTCAAGTAAGATGTTTCAACTTTACATACagaacaaacatttacacatgaaTAATGGTGTAGAATGAGTGATGTATCATTTACGAGTGAGTCAACtctTTTAGGTGAATGTTGAGAGCTAACtgccatatatatatgtatataaacagCAGTAACCACTGCTTCCATGGAAACCATTTTTCAAATTgtaatctgtttgtttgtccaaATGATTCGTGTGTTTGCCTCTCAGCTATGTAGCTGTGTGTAGAGGTAAGTTTATTGTAGTTTATTAGGGGATGCAACTGGTTTTCAGGATAAATGGTAATAAATCTTTATAATGGACCATAGACACAACAGGGTACAATACCAATACATGGATTCTTACTgttttcatcagtgtgtttttgtagaATTTAGCTGATTTAGGATTATTCAAATGGGTTTAATAGGTAGAGTATAATTTCACTAAACCATTTCAGCCATGGTCtggcaaagaaaaaacaatcacTGCTCATAATATTGGAAATTTTGTCCAGTTCAGAAAAAATGGCAATTATTCATTTGGGAATTGAAAGAGTTGACTCTGATTggtgagctgagtcaaatgatctgattcACTAAAAACTTACTAAAAAGaactaaaatttttaaaaataatgtacattaaGATACACACGGTTAACATTTCAAATATGTAAAACATACTGTCTATCATAACTGTGCTGAATATATTTCACAGAATAGTGATTCAGGTACATTCAATATATCCCTTTTAACcaataataaatatgtgattacattcaaatttcttaattttataataataaactgtgatCATATCCCAGTGTATTTGGAAAGTTACAGGAATAGCAGGAATATATACACTACAACACACAGTAATATCAAGTAACCAAGGAATATGTCAAGTAGTGTAGAACCTTCTAGGGTAAGTCGAGCAGCTTGTTTTTTGCATACAGGTCTTCTGTGATCTGATAGACTTCTGagatcagaggtaaagcttctCCCAACAGTGTGATCACCTCCTGATGGCTGCCTGCATTCATCACCTCGAAGAATGCATCACGGCCTGGCAGAGCGCAAAACGCCAATCCAGCTGCTTTCCGGATGATCCACGAGTGGTGCTGCGCCAGTGACGCATTATAGGCCTCGGAGCACATGACGGAGGTCTTACTGTCCTCAGTGCTGGTGCGCAGACTCTCCAAGAAGAGCTGCAGCCAGCGCAGGGCACGGTGGAGACGCAGTAATGTGCGGCAGCCCGACTCCGGATGGCTCCCTCGTTTGGTAAGATCCACCAGCTCATTGTCCAGCTCATACTTCACCATGGACTGGACGGTGAGGTAGTGCGTCCCATTCTCACCCATCAGAAAGTTCTCCAGGATTTGGATTTTGCTGACTGCATCCTtggagatgaaggagaagacGCTTCCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305972 lncRNA downstream 17183 20883799 ~ 20884095 (-) True G258424
TU305953 lncRNA downstream 124569 20776149 ~ 20776709 (-) True G258411
TU305785 lncRNA downstream 290219 20610311 ~ 20611059 (-) True G258268
TU305773 lncRNA downstream 308117 20589758 ~ 20593161 (-) True G258258
TU305751 lncRNA downstream 377633 20522552 ~ 20523645 (-) True G258242
TU305993 lncRNA upstream 50869 20953626 ~ 20953852 (-) True G258437
TU305999 lncRNA upstream 70640 20973397 ~ 20976261 (-) True camk2n1b
TU306176 lncRNA upstream 251149 21153906 ~ 21167598 (-) True G258596
TU306206 lncRNA upstream 335279 21238036 ~ 21241060 (-) True G258626
TU306265 lncRNA upstream 451682 21354439 ~ 21354687 (-) True trnaq-uug_7
XM_034312194.1 mRNA downstream 1367 20886166 ~ 20899911 (-) False ints11
XM_026920243.2 mRNA downstream 1368 20887100 ~ 20899910 (-) True ints11
XM_034311888.1 mRNA downstream 33274 20829388 ~ 20868004 (-) True LOC117599256
XM_034312016.1 mRNA downstream 88754 20783966 ~ 20812524 (-) False acap3a
XM_026921038.2 mRNA upstream 3252 20906009 ~ 20915109 (-) True zgc:193690
XM_026920970.2 mRNA upstream 71627 20974384 ~ 20976330 (-) False camk2n1b
XM_026920080.2 mRNA upstream 76181 20978938 ~ 20983549 (-) True mul1b
XM_026921223.2 mRNA upstream 136634 21039391 ~ 21047873 (-) True LOC113530858
XM_034311562.1 mRNA upstream 171456 21074213 ~ 21083989 (-) False dnajc16
TU305957 other downstream 33320 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 629371 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 781329 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 792068 20100999 ~ 20109210 (-) True kansl2
TU306159 other upstream 266229 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 451869 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1026418 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1543273 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 2295825 23198582 ~ 23240346 (-) False LOC113530288

Expression Profile