RNA id: TU306029


Basic Information

Item Value
RNA id TU306029
length 2341
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G258460
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21085382 ~ 21088222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTCATTTAATAGGGCTTTGCAATATTGAGGGCACAATACAGTACATCTGCATTTCATCACACCGATTATTTAGTGGTTCATATCGAGCAGTTTGCTtaagttaacaaaaaaaaaaaaaaaaaaacaaggagaaaAATATAATCTGATTATCCACTTACAAACACATAGTAAGATATAACACATTGAGTATtcaagcagttaaaaaaaaaaagaaaaagatggagaTGATCTGTGGTGCTCCCTGATCCAGTTATAGAAAGGTCACATTTTTAAGGGATGATCCTGAAACTTAAAGTCCAATCCATCCAAggatacagtatacagtaacCTGTTCTGCTCAGAGACTTCAGCACTACAGTGTAATAAAACTCGGCTAATAAGTAGCAGAACCGTTAAAGGAATACTCGGGCGATTTTCAACTTTGATGTCCATCGAATGAaactgtagtgtatgtgtgattacTACTAAAAATCACACATACGCTACACATCTGTAGACAGATATTAGACTGAAAAACGccagagttttcctttaaacacaTCGCATCACTTCCTGGAACCTGACATTAGAGCACCTGTTAAAAAAGAATTGACTAATATGTgactaaaatagaaaaataaaataaaataaaataaaataaatggccTGATATACACTAGGTACTGACcttgtgtaaaaatgtttattaaatagcTGTTTAGTTGTTACACAGTCAGCGCAAAAGGAACGCAACTATTTAATCAGAAACCTCCCAAAAAATTAGGGTTTTGAGTTGTGTTTTGAGGGAAAGATTCTTTCTGCAGTCTGTTTGCTTGTGCATATATGTGCTCCAGTGGGCGACAAGGTCACATTCACGCTCACACTCATGTCCCCTGGACGATCTCCGAGGTTTCACGTCATCTGAATTCATAAAAAATGATTAGGACAGTAACTGTGGtgataatacattatattacatcatcagtaacaAGTATGAACTAATGGATTTCACAGACTGACCCTGATCCCATGGTGACAGTACCATGAAGTGTCCAGAGTTAACAAGATGCTCTCTCCCTAtctcttactcacacacacactcacacacacactacatacattATAGTACATACATACTGACACTTTGGACATCGATGAAAGCTGGAgtcaaattttaaataataaaaaaaaaaaagaaaaagaaaacaaacaccagAATAAAGGGAAAGAAAAGCTGAGAGAGGACTAGTGCTTTTATTGCGTTTAGAGAACGGAGCGAAGTGCCACTCGCTCACTCCGAGTGCGCCCTCTCCTGGACAGGCTTTGAAGCGCACTCTTCATGTAAGCACAAATAAACTCAATAAAAGCTCACtagtaaagaaagagaaagaaatacacaaaaaaataaaaactcggCAGCCTGACACACCATCACCAATgtaaaaaaacaggaaacaaacaaccaaaaaaagaagaagaagcggCTGAGGTTACGTGGGGATCCCGGGTCAAAGGTCAGGCCTCATAAAACCACGTGTTGATCATCGAAAGAGCTTCTGAGATCCGTGAGTGGTTTATTACGGCTGATGCTCCGCCTGCTGCTTTGAGTCAGGGCATTTCTTTATAGTGGTCCGATAAAACACCACGAGGAAGTACAAGGCTAACCCAGATTCCCTCCAAAAATAAAGTCCACCTCTTTCAACTGTCCACTTTTTCTACACTATGATCCTGTAATGCAATAAATTAGAAAAAGTCACATCTTTTTTTGGAGCTTTTTAAGCTTTTGAGACTAAAAATAAGCCAgaaataaatccaaataaaatggCCCAAggcaaaaatgtacaaaacattcATTAATGTGTTACATGTTAACACGTggcttgctgtgtgtgtatgagcatgcgtttgtgtgtgtgggtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtaggGTTAGGTTTAAGAATGTAGATGTGTGTTAATCATTCCAGGCTCCTGTATCTTGGCTGAAAGTGCATTTCCGTAGGAAACAAGTGAATCTGCTCAGCGGACACCGGAGAAGCCGAACAGCCTCGGCCAATCCCGTCACGCAGCTCCACAGAGGACGAGGAAGGGGCGTGTCTTCCACATCACTACGTCCTGCGTGTCCGGGCGGGAGAAGGCGTGTTCAGTCAGCAGCTTTTGGTTTCCTGGTTCGAGGTGTGTCTCGGCGGTGATGGGTTCAGCGTCGGCGGGTCGAGGAGGACGCCGCGACAGCTTAGACCTCCGCCGCCGTCAGGCCgatcttctcctcctcctgtcaGTCCGAGCTGGGCTTCTTCAGCGAGAACGCATAGATCTTAAAGTGACCGCTCAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305997 lncRNA upstream 109023 20975898 ~ 20976359 (+) True G258439
XR_004579744.1 lncRNA upstream 174300 20908816 ~ 20911082 (+) True LOC117599282
TU305939 lncRNA upstream 177923 20903147 ~ 20907459 (+) False ubxn10
TU305900 lncRNA upstream 295237 20786242 ~ 20790145 (+) True G258362
TU305794 lncRNA upstream 328844 20754692 ~ 20756538 (+) True G258275
TU306047 lncRNA downstream 5107 21093329 ~ 21093844 (+) True G258476
TU306054 lncRNA downstream 15492 21103714 ~ 21105101 (+) True G258483
TU306031 lncRNA downstream 19125 21107347 ~ 21108015 (+) True G258462
TU306028 lncRNA downstream 26828 21115050 ~ 21132053 (+) True G258459
TU306264 lncRNA downstream 266218 21354440 ~ 21354730 (+) True G258680
XM_026920253.2 mRNA upstream 12325 21068173 ~ 21073057 (+) True agmat
XM_026921415.2 mRNA upstream 18165 21063095 ~ 21067217 (+) True pink1
XM_026921161.2 mRNA upstream 23005 21059776 ~ 21062377 (+) True cdaa
XM_026920704.2 mRNA upstream 28876 21052670 ~ 21056506 (+) True LOC113530567
XM_034312061.1 mRNA upstream 28876 21052840 ~ 21056506 (+) False LOC113530567
XM_026920598.2 mRNA downstream 50003 21138225 ~ 21171926 (+) False si:ch73-217b7.1
XM_026920596.2 mRNA downstream 54813 21143035 ~ 21171926 (+) False si:ch73-217b7.1
XM_026920595.2 mRNA downstream 54814 21143036 ~ 21171926 (+) True si:ch73-217b7.1
XM_026920597.2 mRNA downstream 54815 21143037 ~ 21171926 (+) False si:ch73-217b7.1
XM_026920599.2 mRNA downstream 54816 21143038 ~ 21171926 (+) False si:ch73-217b7.1
XR_004579743.1 other upstream 178132 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 180309 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 571187 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 686668 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1606487 19478302 ~ 19478895 (+) True G257622
TU306101 other downstream 140098 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 450032 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1223584 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1583403 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2283525 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile