RNA id: trnaq-uug_7


Basic Information

Item Value
RNA id trnaq-uug_7
length 72
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaq-uug_7
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21354439 ~ 21354697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCCCATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306206 lncRNA downstream 113566 21238036 ~ 21241060 (-) True G258626
TU306176 lncRNA downstream 187028 21153906 ~ 21167598 (-) True G258596
TU305999 lncRNA downstream 378365 20973397 ~ 20976261 (-) True camk2n1b
TU305993 lncRNA downstream 400774 20953626 ~ 20953852 (-) True G258437
TU305980 lncRNA downstream 451869 20901278 ~ 20902757 (-) True G258427
TU306289 lncRNA upstream 20201 21374898 ~ 21375103 (-) True G258700
TU306366 lncRNA upstream 159950 21514647 ~ 21555460 (-) True G258771
XR_004579674.1 lncRNA upstream 229018 21583715 ~ 21586639 (-) True LOC117599221
XR_004579673.1 lncRNA upstream 229018 21583715 ~ 21585880 (-) False LOC117599221
XR_003403152.2 lncRNA upstream 233732 21588429 ~ 21599129 (-) True LOC113530427
XM_026920132.2 mRNA downstream 49998 21297056 ~ 21304628 (-) True ednrab
XM_026921046.2 mRNA downstream 59853 21287614 ~ 21294773 (-) True LOC113530756
XM_034312084.1 mRNA downstream 81615 21259533 ~ 21273011 (-) False wu:fy63c09
XM_034312083.1 mRNA downstream 81615 21259533 ~ 21273011 (-) False wu:fy63c09
XM_026921215.2 mRNA downstream 81615 21259533 ~ 21273011 (-) True wu:fy63c09
XM_034311891.1 mRNA upstream 118021 21472718 ~ 21474842 (-) True LOC117599258
XM_034312021.1 mRNA upstream 139719 21494416 ~ 21496055 (-) True LOC117599277
XM_026920092.2 mRNA upstream 273435 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA upstream 276696 21631393 ~ 21671352 (-) False LOC113530264
XM_026920917.2 mRNA upstream 474568 21829265 ~ 21835197 (-) True ftr92
TU306159 other downstream 184928 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 486668 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1082719 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1234677 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 1245416 20100999 ~ 20109210 (-) True kansl2
XR_004579748.1 other upstream 574478 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1091333 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1843885 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2408977 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 3147036 24501733 ~ 24508467 (-) False tent5ab

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnaq-uug-4 True 72 mRNA 0.44 1 NC_048581.1 45353478 ~ 45353549 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_199 True 72 tRNA 0.51 1 NC_053115.1 12332027 ~ 12332098 (-)
striped catfish (Pangasianodon hypophthalmus) trnaq-uug_2 True 72 tRNA 0.44 1 NC_047605.1 23932866 ~ 23932937 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_199 True 75 tRNA 0.57 1 NC_056700.1 6038306 ~ 6038380 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_2857 True 72 tRNA 0.51 1 NW_025048207.1 51763 ~ 51834 (+)
mexican tetra (Astyanax mexicanus) trnaq-uug_2 True 72 tRNA 0.51 1 NC_035909.1 37092999 ~ 37093070 (-)