RNA id: TU306289


Basic Information

Item Value
RNA id TU306289
length 206
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G258700
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21374898 ~ 21375103 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCATTGTCTATCTTTATCACTGAATGTGTTTGATGAGTGGAAAGCGCTGGAGGGAAATTAGCACAGGCACCATGCCGTGATTCTCCGCCACCGCCACAGATAAAGTGACATtacataaaagaaataaatagacTGTAAGGTACAGAAAGTGTTCTTTAAAAACTGTTAGGAGCACACTGACCTTACTGCGTCGCACCACCTACAC

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306265 lncRNA downstream 20211 21354439 ~ 21354687 (-) True trnaq-uug_7
TU306206 lncRNA downstream 133838 21238036 ~ 21241060 (-) True G258626
TU306176 lncRNA downstream 207300 21153906 ~ 21167598 (-) True G258596
TU305999 lncRNA downstream 398637 20973397 ~ 20976261 (-) True camk2n1b
TU305993 lncRNA downstream 421046 20953626 ~ 20953852 (-) True G258437
TU306366 lncRNA upstream 139544 21514647 ~ 21555460 (-) True G258771
XR_004579674.1 lncRNA upstream 208612 21583715 ~ 21586639 (-) True LOC117599221
XR_004579673.1 lncRNA upstream 208612 21583715 ~ 21585880 (-) False LOC117599221
XR_003403152.2 lncRNA upstream 213326 21588429 ~ 21599129 (-) True LOC113530427
TU306559 lncRNA upstream 374688 21749791 ~ 21750001 (-) True G258940
XM_026920132.2 mRNA downstream 70270 21297056 ~ 21304628 (-) True ednrab
XM_026921046.2 mRNA downstream 80125 21287614 ~ 21294773 (-) True LOC113530756
XM_034312084.1 mRNA downstream 101887 21259533 ~ 21273011 (-) False wu:fy63c09
XM_034311891.1 mRNA upstream 97615 21472718 ~ 21474842 (-) True LOC117599258
XM_034312021.1 mRNA upstream 119313 21494416 ~ 21496055 (-) True LOC117599277
XM_026920092.2 mRNA upstream 253029 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA upstream 256290 21631393 ~ 21671352 (-) False LOC113530264
XM_026920917.2 mRNA upstream 454162 21829265 ~ 21835197 (-) True ftr92
trnaq-uug_7 other downstream 20201 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 205200 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 506940 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1102991 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1254949 20110463 ~ 20119949 (-) False mlh3
XR_004579748.1 other upstream 554072 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1070927 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1823479 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 2388571 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 3126630 24501733 ~ 24508467 (-) False tent5ab

Expression Profile