RNA id: TU306719


Basic Information

Item Value
RNA id TU306719
length 332
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G259087
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22006708 ~ 22007039 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCTTTGCTACGGGGAGGAAAAAGTGAAATTCAGCATGTTGTGGCTCTCGGACCCTGAAATTGTCTGGAGAGTTTCCCAGGAGTTCTGCCACTGGGCGCAATTCTGACCAGTGCTCAATCAGACTGAAGCTGACTGTAAAGAAACAGATGACTCTAAGTTGTCAGCATCCATATGCCTTACCTTAGGGATTGAAGTTTACAATTTTCATTGCTCAGTAATTCACAAAAGACTCCTGCTCCCAGGTCCCCTATGTTGTTCTCACTCAGATCCAAATGTTTAAGGTGACAAGGTGTGGCGCTTATAGCCGAGGCCAGAAAAACACACCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306718 lncRNA upstream 178 22006330 ~ 22006530 (+) True G259086
XR_004579749.1 lncRNA upstream 24090 21970378 ~ 21982618 (+) True LOC117599289
TU306502 lncRNA upstream 254254 21750011 ~ 21752454 (+) True G258883
XR_003403132.2 lncRNA upstream 404240 21600622 ~ 21602468 (+) True LOC113530300
TU306346 lncRNA upstream 450270 21551918 ~ 21556438 (+) False G258753
TU306725 lncRNA downstream 9072 22016111 ~ 22022398 (+) True G259093
TU306726 lncRNA downstream 9378 22016417 ~ 22022472 (+) False G259093
TU306727 lncRNA downstream 18769 22025808 ~ 22026642 (+) True G259094
TU306732 lncRNA downstream 35740 22042779 ~ 22043058 (+) True G259099
TU306730 lncRNA downstream 40101 22047140 ~ 22048369 (+) True G259097
XM_034312134.1 mRNA upstream 39813 21963278 ~ 21966895 (+) True LOC113530690
XM_026920922.2 mRNA upstream 43796 21960427 ~ 21962912 (+) True LOC113530693
XM_026920921.2 mRNA upstream 48012 21955558 ~ 21958696 (+) False LOC113530692
XM_026920920.2 mRNA upstream 48012 21956247 ~ 21958696 (+) True LOC113530692
XM_034312133.1 mRNA upstream 148849 21838989 ~ 21857859 (+) True abcg2a
XM_026921231.2 mRNA downstream 63396 22070435 ~ 22087209 (+) True ndnf
XM_026921232.2 mRNA downstream 63943 22070982 ~ 22087209 (+) False ndnf
XM_034311571.1 mRNA downstream 91714 22098753 ~ 22148588 (+) True prdm5
XM_034311574.1 mRNA downstream 91714 22098753 ~ 22123711 (+) False prdm5
XM_034311572.1 mRNA downstream 91847 22098886 ~ 22142339 (+) False prdm5
TU306357 other upstream 464454 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 775837 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 1099458 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 1101635 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 1492513 20510244 ~ 20514195 (+) False LOC113530729
trnal-uaa_2 other downstream 304767 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 664586 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 1364708 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 1364708 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 1380499 23387538 ~ 23389314 (+) True G259993

Expression Profile