RNA id: TU306725


Basic Information

Item Value
RNA id TU306725
length 6288
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G259093
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22016111 ~ 22022472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCccatttaaatacaaaaaaaaaaaactaaaataaaaatcaacatCATATTCATTTTGCATATCAAAGATCCATTCAGTAATAATTACAATCCGAACACTTCATAAACCGCTTGAGCAGATCTGTACACAAACTCTGATTTAGAAACTAGTAACATTAACAATATTACAAAGATCTCAGCttgaaaaataattcaaatgaataaCATCTTAGCAATTAGCATCATAAaattagatatttatatatttccacataaaaatacaaaataatgttaatgacaTATATGAAAAATTATTCCAAGTATTTTCGCCActattaaagtgaaataaaaaaaggataaaacaagatgaaatgaaatagaaatgcatgaaaaagtctccttttgttttttttttcttagcaaaATGCTATCCAAAATAAACTACAATCATTTACATCAGTACAAAGAGATCtgggtttttaaaaatagtcGCAATGAAAAAAAGGGGTTCATCTTTTTTCCGACCGTAAAAAAATGACAACCGTGAATCGGAACTCTGCAAAATAGgcaatgacaaaaataaatctgcGTTAAAAAGGTATACACTGTAATTCTCACTATTCTTTTATACAAACGTTAGAAACAGTATTGCACGACACGACACAGATCCGAGGTTAGTCAGCCTTTCAAAGTGTGTTCAAGTTTCTGCACGCCAGTgagggggagagacagagaggctcAAGTGTTTTccatgaaattaataataagaataaaaaaaacccttcaaatAATATAGTAACTGAATATATTAAGTTTTAATCACGTTAAAATGTTCAAAAGCAACTATATATTAATGAATCTATGACTATACACATAATTGCATGGGTGGTTTGATTTagcttgttttttcttttaatatatttccacCAAAACCCTGCTGAATCATAAataattggggaaaaaaaatgaagaataagtgaaatagaaaaatacaatCCAATctacaaaaatagaaataaatacgaCTTCGtacaaaagacaagaaaaaaaacaaaacgaaaaaaaaacaacaggcgTTGCACGGAGAGAGGAGGACACAGTACTGAGCACAAACTCCAGCTACAGCAGAGTGTTAAAGGGATTACGTGACGGTATAAATGTTGTCGGGAACGTTCCTTCGTGGACTTCGGGACACTCGTCCTAACGTTAtgttcaatttttttctctcttcaatCATCGTTCACGTCCCATATATAACTCGATCACACGTTATTGTGTCCAACAATTTTATCAAATAAGTTAGCAcgaataaacattattaaataatttgttataGTTAATAAAAAGGTAGTCTGaaagacacaaaataaaacGTTAAtaaagaaggtttttttttccttttacatttttttgtgttggaGTGTACAGTAGACTTCAATATCAATCCGATAACATCGATGTGCTATGGACGTAGAGTACAGTAGTGCACGTGATCATGTGACGATGGACGTGAATAAATacttagaaataaataataacacgCAATCGCAAAAAACGTGAAAAACGCCAGACGCAAACGATCAGATCACAGAGCACGTGAAGGGCACTGAACATATCACCAACGCCACAAGCACAGCGATACAGAAAGGAGccgaactagctagctagctagatatgCACAGAGTGACTACAATGAGTACAGTACCAAAACGTGGCGTAACGCGCCGGCATTCATTGCTTCCACACAGATTGTCCCTAACACTGTCTACAGAGTTCCACTTCATTACAGAGACGAGACGACAAAATCTGCGCAGACCACTACGAAAAACTCAGTAAAAAATATCGATTgggttgcatttttttaaaaagtcaaaacaaaaaaatcctgctTTTAGGTCCATCTGCTCCTGTATTTCTAATTATAATCAACGTCTCCTCTTAGTTATTTGTCAACATTTCTATCCGTGTTGATAGTTGGAGAGAAGAAGACAAGCACATCAGCCATCACATAAGACAAATATCACCTCCACACACTCTCATAGCTACATAGCTAAAGCTAGAACTGACGTCTAGTTAGCGATACAATTAATGACTCACTAGAACGTCGGCCATTTTGAGAAACGATCTCTCCTAATTTCTTGATAGTCGTTTTTTACACAGTGTAGTCTCACTGGATGAAGGATGTTGTGTGTTACTCATAATGCGCTAAGAAATGTTGCTTGGTTTTTAACATAATGCAGAGGCGTCAACATcgctaacaagaaaatcttagcaggaaaaaatatattaaaatatagtaaaatatacaattttgCTTTTCAGATTTGCGCCAAGAAACAGTTAGAAAAGAGTGAGATAAACTTCAACATATGCACTAGTTAATAATGAAAATCATCATATGTCTCCTGTATCACAtgtagcaaggggtcaaaaatcGTAAAAATGCTACGGCTAAAGTGtacaatgttggcacctctgcataATGCTTACAAATGTAACTTTCAAAATATGCGTAGTAAAATGTAGCGTAAAGTCAGCTACATTGTCTGTCCTTCAGGCTATGTAATGTGCTAGCTGGGCAATCGCTAATTAGCCTTTTAGCTAGCTACTGAACAACTATAGTTATTAGTTCTCTTTTCTAGTGATTCTTCTTTTTGACTCAACCCTGAGTCAACTGAGTCAAGTTTACTGCTCCAGTGAAGTTTTATCAACAGTGTTAACATgaattctgaaagaaaaaaaaaagcattttggaTACATTAGCTCATCTGTGTGGTAAAAACCATCAGCTAGCTACTGAATATGCTAGTTATAATGTTTTATCTTTCAAGCGATTCTTCTTTTTGACTCAATATTCAGTGAGTCAAGTTTACTGCTCCAACGAACAAGGTTTCTCAATGATCTTTACATGTTAGCATGAATTGTGGTAAAAGCCCTAGCATTTTGGATACATTAGCTCATTTgcgtggttaaaaaaaagatccGCTAGCTACTGCATATGCTAGTTATGTTTAGCTTTCTAAATATTCTTCTTTTTGACTCAGTATTCAATGAATATTCAATGAATTCTGGTAAAAACCTAACATTTTGGATACATGAACTATAAAAACCATCAGCTAGCTACTGAATATGCTCGTTATAATGTTTTATCTTTCTAGTGATTCTTTTTTTTGACTCAGCCCAGAGTCAACTGAGTCAAGTTTACTGCTCCAGTGAAGAACAAAGTTTTATCAACAGTGTTAGCATGAAttgtggaaaacaaaacaaaaaataaacaaacaaactagtaTTTTGGATATGTTAGCTCATCtgtgtggttaaaaaaagatGAGTTAGCTACTGAATATGCTAGACATGCTTAACTTTCTAAAGATTCTTCTTTTTGTCTCAGTATTCAATGAATATTCAATAAATTCTGGTTCTGAATTCAACATTTTGGATACATTAGCTCATCTGTGGTAAAAGCCATCAGCTAGCTACTGATTATGCTAGTTATAATGTTTTACCTTTCTAGTGATTCTTTTTTCTGACTCAACCCCGAGTCAACTGAGACAAGTTTACTGCTCCAGTGAAGAACAAAGTTTTATCAACAGTGTTAACATGAATTCCGGAAAACAAaacgaaaaacaaacaaacaaacaaacaaacaaacaaacaaaactagcATTTGGGATACGTTAGCTCATCTGTGTGGCTAAAAAAAGATGAGTTAGCTACTGAATATGCTAGACATGTTTAACTTTCTAGAGATTCTTCTTTTTGTCTCAGTATTCAATGAATATTCAATGAATTCTGGTTCTGAATTCAGTATTTTGGATACATGAACTCATCTGTGTGGTACGTCATTTTCAGCTAGCAACAGTTGACCTGTGTGAGTAGCAGGCACTGAAAGCAGAGATTTTGTAACATTCTGCTATCTACATTACTTCTAAactaaaaaacaacatgaatacacaatacacacagacaaGACGTACAAGAGCACTGGACGGCACACTGCTTCTTCACTAAGCGATACACTAAATGGCGCTAACCAAAGACGCTAATGACGCTATTTGTGTAAACAAATTACCATATCGAAGCATGCAAAGGTTTTTAGTACGCATTTTCAACGCAATATTCCTTAATGCTCTCTGTTATTGATATTAACTTGTACTGGAGAGCCTAATATCTTTTTAAATCTCTCATGCTACGTAGTGTAAGTGATCAATAAAATGAATCTTTTGTGTCTTTTTGGAAACATGTCTATAAGCCTAACGCATGCAAACGatgcaaagacacacacatacacacacacacacacacacacacacacacacatgcatgtacgGTTTCACATTCCATTCCTCCACGCCCGTGTGAGAGCGCACGCTGCATTTCGATTGTAATTGGTAACGATTTCAGTTAAAGATGCCGTTAGATATCGCAATAATATGTCTAGTTAttcattatagcagcaaagCGTTTTATATACGTAGCTCACGATTAAATTGCGACAAAACCAGATCCGCAGGTCTGAGGTAATAGTCTTCTTGCAGGTcaaaaatatttagaattttaGAAAAATCAAAGGTATGCAACTTTCCATTTATCGTAAATGAAGTCGATCAGCCAAGGCATGTTTGGTGTTGAACCAAAATTAACGTAAAAATTTCCAAACATATCCATTTTCGTTTAAAACGGAACCACATTATCATCCACgtataccacagtgctattgaattatggaatctgattgatcaggaggtgttgattaattttctttgacAGTCTTCAactttacaaaatatttttgcatatcTTTTGCCTTATCAGGGAACAACTtatgtttatatctgctataacattagtgataacatgaactaacttgcttTACCTACGTTCCGCAACATTATacgtaaatataaatggataaaacgtacaatgtgtcgttctttaataaataaaacgcTGTAATCGTTGGCTGtcctataagaggaataaaacacgtcaggACATAATGGcattggaaaaataatcaacttgagGATGGTTATGCATCACTTCACCTGGTCATTGATTATTCtcccataacagcacgtcctgttgtgttttattccttacatcatGTCCAGCTACAATTATCCTCTCAAACTGTAGGAGGCAGGGTTAAAAGTGGATGAATGATAACAAATTGtgctaaggaaaaaaaaaaaaaaaagtgttgtccaagatggcggcCCGCATAATGTTACATCATGCAGCTACACTGTgaagttttatttaacaataaacaaaaaccaCCTCAGAACTCTGATGTGGTTTGAGGGAAATATTTAAGGAAAAGATTTTGGGTCAGATtccattatttgttagctacattagacTCGGAGCTGTTGCAAAACTCCAGACATCAGACATGTtggtcttggctgattgactacatttgaaATAAGctaaaaattgtgtaaattagatttgttttttttttcccaaaaccaTTCCagaatttacaaaataaaggtGAGAATATTGTATTCTTTTGCTACCTTTGGTAAAGACCCTTGGCAGGCATCTACGTCTGCAGGGGAGCTTACAGATTTATACACTCATAGCTCAGCACGGGTTCGTGATTTCCCCACTGTAGCGCTTACACCACTATGGTGGGGCTCCCCAAGATTACATCATCAAGTGTTTATCCAGAGACAATTGCGCACTTTGCCCACGGGGGGTTtagcagcagacagacagacggacagacagacaactgCCCTCTCATGCGAAAGACATTCTCATATCTACTTGTTAAATCtgacatataaaaataattcggaaaaaaaaaaaaaaaaaaaaaactacaaatctCTTTTCTGTTaatctcctttaaaaaaaaaaaaaacaccaaagtaCCACAAAAGCCTGAGATGTAGGGACTGAGGGTAGGGTAGAGGAGCAAAAGTGTGTGATTTGGTGAAACAAATGAGGCATGTAGTGTTTCTGGCTGCTacaaaagataaagataaatatatcCATAGAtctctatatactgtatactgttaGGTGCTCTATACTGATAGCTCGGGCTCGAGGCGCACTTCCTTGTCGTTTGTTAGTTCCAGCGGAAGTGGATCTGGCGCGGCCGGTCGGCTCCCTCTTTGACCAGCGGCTTGTGGAACTCTCGGCCGGCACGCGAGTGGATGTTCGCCCAGCAGAACTCGCAGTAGTACTGCAGACATGTGACGTTGGCGCAGAAGAAGGGCGCGAACTTGCCTCCGCAGCGCGCCCCCTGACACTCGTCACACAGCTGATCGTCCAAAACGTACGGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306719 lncRNA upstream 9072 22006708 ~ 22007039 (+) True G259087
TU306718 lncRNA upstream 9581 22006330 ~ 22006530 (+) True G259086
XR_004579749.1 lncRNA upstream 33493 21970378 ~ 21982618 (+) True LOC117599289
TU306502 lncRNA upstream 263657 21750011 ~ 21752454 (+) True G258883
XR_003403132.2 lncRNA upstream 413643 21600622 ~ 21602468 (+) True LOC113530300
TU306727 lncRNA downstream 3410 22025808 ~ 22026642 (+) True G259094
TU306732 lncRNA downstream 20381 22042779 ~ 22043058 (+) True G259099
TU306730 lncRNA downstream 24742 22047140 ~ 22048369 (+) True G259097
TU306707 lncRNA downstream 65784 22088182 ~ 22088751 (+) True G259078
TU306766 lncRNA downstream 126507 22148905 ~ 22150799 (+) True G259131
XM_034312134.1 mRNA upstream 49216 21963278 ~ 21966895 (+) True LOC113530690
XM_026920922.2 mRNA upstream 53199 21960427 ~ 21962912 (+) True LOC113530693
XM_026920921.2 mRNA upstream 57415 21955558 ~ 21958696 (+) False LOC113530692
XM_026920920.2 mRNA upstream 57415 21956247 ~ 21958696 (+) True LOC113530692
XM_034312133.1 mRNA upstream 158252 21838989 ~ 21857859 (+) True abcg2a
XM_026921231.2 mRNA downstream 48037 22070435 ~ 22087209 (+) True ndnf
XM_026921232.2 mRNA downstream 48584 22070982 ~ 22087209 (+) False ndnf
XM_034311571.1 mRNA downstream 76355 22098753 ~ 22148588 (+) True prdm5
XM_034311574.1 mRNA downstream 76355 22098753 ~ 22123711 (+) False prdm5
XM_034311572.1 mRNA downstream 76488 22098886 ~ 22142339 (+) False prdm5
TU306357 other upstream 473857 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 785240 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 1108861 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 1111038 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 1501916 20510244 ~ 20514195 (+) False LOC113530729
trnal-uaa_2 other downstream 289408 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 649227 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 1349349 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 1349349 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 1365140 23387538 ~ 23389314 (+) True G259993

Expression Profile