RNA id: XM_026920416.2


Basic Information

Item Value
RNA id XM_026920416.2
length 8697
RNA type mRNA
GC content 0.43
exon number 10
gene id cpeb2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22016047 ~ 22048388 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGATGAGCGGCCGGGTAACGCCGAGGAAGGGGGGGTGCGCAGTCGGTCGGTCGGCGGAAAACGGTCcgaaaaattataataataataaaataaaatatccgCAGATTAATCAGTAATAAGAGAGTACAGGCGGACGACCGTGTACCGACGATTTCTCGACGACCGACCCCCTACAGCTCCTCCTCTCTCTATACGCTATATAGGAAGTTAAAGGTCACTGTCTGCGCGCTCCCGTTTTTGTTCTTGGGAAAAAAAGGCCGCGGCTATTCGCGAGCTCCCGTTTTTATTCCCGTATTTTGACGCAAATAAATGGGTGATTACGGCTTCGGCTTGTTACAGACAGCGAGTCTCGACAGCGGCAGCGCACTGTTCGGCGCTTTCAGATCGTCCTACTCGAGCCTCTCCCCGGTCACCGGTGACCTCCTCCTCCCCGCCGCCTCTCCGCCGTCTCTCTCCCGCAGCAGCAGCGCAGCAGCGTCCCCGCTCTTCCCGTCGGCCGCCGCGCCCCGGCGAAACATGCAGGATGAGCCCGCGGGGGTGACAGCCTCGCGGCGTCAGGTCGCGTCCACCGAGTCGAGCGACGAGGCCGGAAACGCGGCGGCCGAGCGATCACCACCCACCGGCGGCGGCGGCGAAAACGGGACCGGTCATACCCACACGGACTACGACTTCAGCGACTATAAGGCCGGACAAGGCCGCTTTGGTGCTGTCGCGTCACTGCGTGACCTTGAGAGAGAAAGGAACGAAAATCAGCACGCAGACTCCGAGTGCGCCCCAGAAGGCCCCGGTCAGCTCCCGGAGGACGCTCTGACCGATGCTGCGGCGCCCTCGAGCGCATCCGTGAGTCCCAACAAGGTCCAGATCCGAATGGAGCCCACAAGTGCGCATCTCGCGGCGGCCTTCACGAGCCTCCCGCATCACGAGACCTCGGCTGCTTCCCCCTCCCTGCCCGGGTTCGGTGCACCGTGGTCAGTGCACACCAGCTCCCCCCCGCCGCCGGTATCCAACAGCGGGAGTCACATCATGCCTGGTACCGAACCCGATGCAGGGTTCTACCCAGGAATCCCATCCTCGGTGAATCCCGGCTTCTTCCATAGCTTCTCTCCCGGTGTGAACGCGCACGGGTTCGGCGCTCCTTTCTCGCCGCAGATGGGCGGCGCTCCGCCGCAGCACGCGCCCAGCCGCCGCTCCCCGCTCAGCCCGCAGCACGGCACCTTCCTGCAGCAGAGGAACAGCTACAACCAGCAGCAGCCTATGATGAAACAGTCTCTGTGGGGCAGCGGCTGGAACACAGCGGGCGTGTCCTGGGGCAGGGACCATCGAGGGCGTGGCGTTGGCATGGCCGTGCCCGTCTCGCTTGGCCAGATCTCGCCCATGAAGAAGCCGTTCAGCAGCGAGAGCGTCATCGCCCCACCCAAGTTCCCACGCTCTGGAGCTTCGATCGGCCCTAAGACCTGGAGCGATGACAACGTGTTCCGCACCGACAACAATAGCAACACACTGCTGCCTCTGCAGgATCGGAGCAGAATGTATGACAGTCTGAACATGCACTCACTGGAGAGTTCTCTAATCGACATCATCCGGGCCGAGCAGGACCCTCTGAAAGGCCGCATGGGATGCCCGCATCCTGGCGCCGATGGCCTGCTCATGCTCAATGGACGCTCCTCCCTTTTTCCAATAGACGATGGTCTCCTTGACGACGGGCACGGTAACCAGGGCGTACCCGGAGTTCTGGGATCTTCCGGTTATCCGCATCAGAACGGCGAGCGCATCGAGAGGTTCTCACGGAAAGTGTTTGTGGGCGGCCTGCCACCCGATATAGACGAAGATGAGATCACCTCCAGTTTCCGGCGCTTTGGTCACCTGGTGGTTGATTGGCCACACAAGGCAGAGAGCAAATCCTACTTTCCTCCAAAAGGTTATGCCTTCCTGCTTTTCCAAGAGGAGAGCTCGGTGCAGGCACTGATCGAAGCCTGTCTGGAGGAGGACGGCAaactgtacctgtgtgtgtccaGCCCCACTATCAAAGACAAGCCTGTTCAGATCCGCCCCTGGAACCTGAGTGACAGTGATTTTGTGATGGACGGCTCGCAGCCTCTCGACCCTCGCAAGACCATCTTCGTAGGCGGAGTGCCCCGTCCTCTGAGAGCAGTTGAGCTGGCTATGATCATGGACCGCCTGTACGGTGGCGTGTGTTATGCCGGGATCGACACCGATCCTGAGCTTAAGTACCCGAAAGGGGCGGGCCGAGTTGCCTTCTCCAATCAGCAGAGCTACATCGCCGCCATCAGCGCCCGATTCGTCCAGCTGCAGCACGGAGACATCGACAAACGGGTCGAGGTGAAGCCGTACGTTTTGGACGATCAGCTGTGTGACGAGTGTCAGGGGGCGCGCTGCGGAGGCAAGTTCGCGCCCTTCTTCTGCGCCAACGTCACATGTCTGCAGTACTACTGCGAGTTCTGCTGGGCGAACATCCACTCGCGTGCCGGCCGAGAGTTCCACAAGCCGCTGGTCAAAGAGGGAGCCGACCGGCCGCGCCAGATCCACTTCCGCTGGAACTAACAAACGACAAGGAAGTGCGCCTCGAGCCCGAGCTATCAGTATAGAGCACCtaacagtatacagtatatagagaTCTATGgatatatttatctttatcttttgtAGCAGCCAGAAACACTACATGCCTCATTTGTTTCACCAAATCACACACTTTTGCTCCTCTACCCTACCCTCAGTCCCTACATCTCAGGCTTTTGTGGtactttggtgttttttttttttttaaaggagattAACAGAAAAGagatttgtagttttttttttttttttttttttccgaattatttttatatgtcaGATTTAACAAGTAGATATGAGAATGTCTTTCGCATGAGAGGGcagttgtctgtctgtccgtctgtctgtctgctgctaAACCCCCCGTGGGCAAAGTGCGCAATTGTCTCTGGATAAACACTTGATGATGTAATCTTGGGGAGCCCCACCATAGTGGTGTAAGCGCTACAGTGGGGAAATCACGAACCCGTGCTGAGCTATGAGTGTATAAATCTGTAAGCTCCCCTGCAGACGTAGATGCCTGCCAAGGGTCTTTACCAAAGGTAGCAAAAGAATACAATATTCTCacctttattttgtaaattctGGAAtggttttgggaaaaaaaaaacaaatctaatttacacaatttttagCTTATttcaaatgtagtcaatcagccaagaccaACATGTCTGATGTCTGGAGTTTTGCAACAGCTCCGAgtctaatgtagctaacaaataatggaATCTGACCCAAAATCTTTTCCTTAAATATTTCCCTCAAACCACATCAGAGTTCTGAGGtggtttttgtttattgttaaataaaacttcACAGTGTAGCTGCATGATGTAACATTATGCGGgccgccatcttggacaacacttttttttttttttttccttagcaCAATTTGTTATCATTCATCCACTTTTAACCCTGCCTCCTACAGTTTGAGAGGATAATTGTAGCTGGACatgatgtaaggaataaaacacaacaggacgtgctgttatgggaGAATAATCAATGACCAGGTGAAGTGATGCATAACCATCctcaagttgattatttttccaatgCCATTATGTcctgacgtgttttattcctcttataggaCAGCCAACGATTACAgcgttttatttattaaagaacgacacattgtacgttttatccatttatatttacgtATAATGTTGCGGAACGTAGGTAaagcaagttagttcatgttatcactaatgttatagcagatataaacataAGTTGTTCCCTGATAAGGCAAAAgatatgcaaaaatattttgtaaagtTGAAGACTgtcaaagaaaattaatcaacacctcctgatcaatcagattccataattcaatagcactgtggtatacGTGGATGATAATGTGGTTCCGTTTTAAACGAAAATGGATATGTTTGGAAATTTTTACGTTAATTTTGGTTCAACACCAAACATGCCTTGGCTGATCGACTTCATTTACGATAAATGGAAAGTTGCATACCTTTGATTTTTCtaaaattctaaatatttttgACCTGCAAGAAGACTATTACCTCAGACCTGCGGATCTGGTTTTGTCGCAATTTAATCGTGAGCTACGTATATAAAACGctttgctgctataatgaaTAACTAGACATATTATTGCGATATCTAACGGCATCTTTAACTGAAATCGTTACCAATTACAATCGAAATGCAGCGTGCGCTCTCACACGGGCGTGGAGGAATGGAATGTGAAACcgtacatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtctttgcatCGTTTGCATGCGTTAGGCTTATAGACATGTTTCCAAAAAGACACAAAAGATTCATTTTATTGATCACTTACACTACGTAGCATGAGAGATTTAAAAAGATATTAGGCTCTCCAGTACAAGTTAATATCAATAACAGAGAGCATTAAGGAATATTGCGTTGAAAATGCGTACTAAAAACCTTTGCATGCTTCGATATGGTAATTTGTTTACACAAATAGCGTCATTAGCGTCTTTGGTTAGCGCCATTTAGTGTATCGCTTAGTGAAGAAGCAGTGTGCCGTCCAGTGCTCTTGTACGTCttgtctgtgtgtattgtgtattcatgttgttttttagtTTAGAAGTAATGTAGATAGCAGAATGTTACAAAATCTCTGCTTTCAGTGCCTGCTACTCACACAGGTCAACTGTTGCTAGCTGAAAATGACGTACCACACAGATGAGTTCATGTATCCAAAATACTGAATTCAGAACCAGAATTCATTGAATATTCATTGAATACTGAGACAAAAAGAAGAATCTCTAGAAAGTTAAACATGTCTAGCATATTCAGTAGCTAACTCATCTTTTTTTAGCCACACAGATGAGCTAACGTATCCCAAATgctagttttgtttgtttgtttgtttgtttgtttgtttgtttttcgttTTGTTTTCCGGAATTCATGTTAACACTGTTGATAAAACTTTGTTCTTCACTGGAGCAGTAAACTTGTCTCAGTTGACTCGGGGTTGAGTCAGAAAAAAGAATCACTAGAAAGGTAAAACATTATAACTAGCATAATCAGTAGCTAGCTGATGGCTTTTACCACAGATGAGCTAATGTATCCAAAATGTTGAATTCAGAACCAGAATTTATTGAATATTCATTGAATACTGAGACAAAAAGAAGAATCTTTAGAAAGTTAAGCATGTCTAGCATATTCAGTAGCTAACTCatctttttttaaccacacaGATGAGCTAACATATCCAAAAtactagtttgtttgtttattttttgttttgttttccacaaTTCATGCTAACACTGTTGATAAAACTTTGTTCTTCACTGGAGCAGTAAACTTGACTCAGTTGACTCTGGGCTGAGTCAAAAAAAAGAATCACTAGAAAGATAAAACATTATAACGAGCATATTCAGTAGCTAGCTGATGGTTTTTATAGTTCATGTATCCAAAATGTTAGGTTTTTACCAGAATTCATTGAATATTCATTGAATACTGAGTCAAAAAGAAGAATATTTAGAAAGCTAAACATAACTAGCATATGCAGTAGCTAGCggatcttttttttaaccacgcAAATGAGCTAATGTATCCAAAATGCTAGGGCTTTTACCACAATTCATGCTAACATGTAAAGATCATTGAGAAACCTTGTTCGTTGGAGCAGTAAACTTGACTCACTGAATATTGAGTCAAAAAGAAGAATCGCTTGAAAGATAAAACATTATAACTAGCATATTCAGTAGCTAGCTGATGGTTTTTACCACACAGATGAGCTAATGTAtccaaaatgcttttttttttctttcagaattcATGTTAACACTGTTGATAAAACTTCACTGGAGCAGTAAACTTGACTCAGTTGACTCAGGGTTGAGTCAAAAAGAAGAATCACTAGAAAAGAGAACTAATAACTATAGTTGTTCAGTAGCTAGCTAAAAGGCTAATTAGCGATTGCCCAGCTAGCACATTACATAGCCTGAAGGACAGACAATGTAGCTGACTTTACGCTACATTTTACTACGCATATTTTGAAAGTTACATTTGTAAGCATtatgcagaggtgccaacattgtaCACTTTAGCCGTAGCATTTTTACgatttttgaccccttgctacaTGTGATACAGGAGACATATGATGATTTTCATTATTAACTAGTGCATATGTTGAAGTTTATCTCACTCTTTTCTAACTGTTTCTTGGCGCAAATCTGAAAAGcaaaattgtatattttactatattttaatatattttttcctgctaagattttcttgttagcgATGTTGACGCCTCTGCATTATGTTAAAAACCAAGCAACATTTCTTAGCGCATTATGAGTAACACACAACATCCTTCATCCAGTGAGACTACACTGTGTAAAAAACGACTATCAAGAAATTAGGAGAGATCGTTTCTCAAAATGGCCGACGTTCTAGTGAGTCATTAATTGTATCGCTAACTAGACGTCAGTTCTAGCTTTAGCTATGTAGCTATGAGAGTGTGTGGAGGTGATATTTGTCTTATGTGATGGCTGATGTGCTTGTCTTCTTCTCTCCAACTATCAACACGGATAGAAATGTTGACAAATAACTAAGAGGAGACGTTGATTATAATTAGAAATACAGGAGCAGATGGACCTAAAagcaggatttttttgttttgactttttaaaaaaatgcaacccAATCGATATTTTTTACTGAGTTTTTCGTAGTGGTCTGCGCAGATTTTGTCGTCTCGTCTCTGTAATGAAGTGGAACTCTGTAGACAGTGTTAGGGACAATCTGTGTGGAAGCAATGAATGCCGGCGCGTTACGCCACGTTTTGGTACTGTACTCATTGTAGTCACTCTGTGcatatctagctagctagctagttcggCTCCTTTCTGTATCGCTGTGCTTGTGGCGTTGGTGATATGTTCAGTGCCCTTCACGTGCTCTGTGATCTGATCGTTTGCGTCTGGCGTTTTTCACGTTTTTTGCGATTGcgtgttattatttatttctaagtATTTATTCACGTCCATCGTCACATGATCACGTGCACTACTGTACTCTACGTCCATAGCACATCGATGTTATCGGATTGATATTGAAGTCTACTGTACACtccaacacaaaaaaatgtaaaaggaaaaaaaaaccttctttaTTAACgttttattttgtgtctttCAGACTACCTTTTTATTAACtataacaaattatttaataatgtttattcgTGCTAACTTATTTGATAAAATTGTTGGACACAATAACGTGTGATCGAGTTATATATGGGACGTGAACGATGattgaagagagaaaaaaattgaacaTAACGTTAGGACGAGTGTCCCGAAGTCCACGAAGGAACGTTCCCGACAACATTTATACCGTCACGTAATCCCTTTAACACTCTGCTGTAGCTGGAGTTTGTGCTCAGTACTGTGTCCTCCTCTCTCCGTGCAAcgcctgttgtttttttttcgttttgttttttttcttgtcttttgtaCGAAGtcgtatttatttctatttttgtagATTGGattgtatttttctatttcacttattcttcattttttttccccaattatTTATGATTCAGCAGGGTTTTGgtggaaatatattaaaagaaaaaacaagctAAATCAAACCACCCATGCAATTATGTGTATAGTCATAGATTCATTAATATATAGTTGCTTTTGAACATTTTAACGTGATTAAAACTTAATATATTCAGTTACTATATTatttgaagggttttttttattcttattattaatttcatggAAAACACTTgagcctctctgtctctccccctcACTGGCGTGCAGAAACTTGAACACACTTTGAAAGGCTGACTAACCTCGGATCTGTGTCGTGTCGTGCAATACTGTTTCTAACGTTTGTATAAAAGAATAGTGAGAATTACAGTGTATACCTTTTTAACgcagatttatttttgtcattgcCTATTTTGCAGAGTTCCGATTCACGGTTGTCATTTTTTTACGGTCGGAAAAAAGATGAACCCCTTTTTTTCATTGCgactatttttaaaaacccaGATCTCTTTGTACTGATGTAAATGATTGTAGTTTATTTTGGATAGCATtttgctaagaaaaaaaaaacaaaaggagactttttcatgcatttctatttcatttcatcttgttttatcctttttttatttcactttaatagTGGCGAAAATACTTGGAATAATTTTTCATATAtgtcattaacattattttgtatttttatgtggaaatatataaatatctaattTTATGATGCTAATTGCTAAGATGttattcatttgaattatttttcaaGCTGAGATCTTTGTAATATTGTTAATGTTACTAGTTTCTAAATCAGAGTTTGTGTACAGATCTGCTCAAGCGGTTTATGAAGTGTTCGGATTGTAATTATTACTGAATGGATCTTTGATATGCAAAATGAATATGatgttgatttttattttagttttttttttttgtatttaaatggGGTGTTGATTACAATCTTTATTTCGTATTTCAGTTTCATGAATAAAGAACTGTTCTGTTCGGACACA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306588 lncRNA downstream 209287 21805096 ~ 21806760 (-) True G258966
TU306582 lncRNA downstream 216803 21798836 ~ 21799244 (-) True G258961
TU306562 lncRNA downstream 263595 21751405 ~ 21752452 (-) True G258942
TU306559 lncRNA downstream 266046 21749791 ~ 21750001 (-) True G258940
XR_003403152.2 lncRNA downstream 416918 21588429 ~ 21599129 (-) True LOC113530427
TU306958 lncRNA upstream 293473 22341861 ~ 22371089 (-) True G259294
TU307005 lncRNA upstream 374204 22422592 ~ 22424242 (-) True G259337
XR_004579704.1 lncRNA upstream 419275 22467663 ~ 22469753 (-) True LOC117599239
TU307420 lncRNA upstream 604950 22653338 ~ 22656929 (-) True G259692
TU307467 lncRNA upstream 694356 22742744 ~ 22787979 (-) True G259724
XM_026920914.2 mRNA downstream 1818 21999441 ~ 22014229 (-) True LOC113530687
XM_026920924.2 mRNA downstream 15105 21995034 ~ 22000942 (-) True LOC113530694
XM_026920912.2 mRNA downstream 23207 21968614 ~ 21992840 (-) True cc2d2a
XM_034312126.1 mRNA downstream 61442 21925244 ~ 21954605 (-) True fyco1a
XM_026920940.2 mRNA upstream 235833 22284221 ~ 22305383 (-) False LOC113530701
XM_026920939.2 mRNA upstream 235833 22284221 ~ 22305383 (-) True LOC113530701
XM_026921116.2 mRNA upstream 502168 22550556 ~ 22569855 (-) False epm2a
XM_034312051.1 mRNA upstream 502168 22550556 ~ 22569001 (-) False epm2a
XM_026921115.2 mRNA upstream 502168 22550556 ~ 22567225 (-) True epm2a
XR_004579748.1 other downstream 61442 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 661350 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 846349 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 1148089 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1744140 20252170 ~ 20271907 (-) True G258077
TU306971 other upstream 397642 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1150194 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 1715286 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2453345 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 2457240 24505628 ~ 24508333 (-) False tent5ab

Expression Profile