RNA id: TCONS_00007981


Basic Information

Item Value
RNA id TCONS_00007981
length 705
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_004175
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27817301 ~ 27827533 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAACTTTAAATGAATGATACTCACTTTGTATCGTATTTATTGCTCACTTCAAACCTTAATTCTTACTTAACGCAAAAGCAGACACTGGATACATTTTATACGTCGCATGTAATACAAGCTGTTTTATAGCTATAAAGATTTAACGTACACAACAATGGCTGTGTTTTGAATCCATGCATCAAGCAGTCAAGATGTTTCGACCCAAACCCACACTGAAGGACAGACAGCATCTGTACAAGCTGATCATCAGTCAACTGCTGTATGACGGATACACCATCATCGCCAACAGCCTCATCAGTGAAGTCAAGCCGCAGAATGTGGTTTCTCCATCAGAGCAGCTCATGCAGCTCGCCAAGATAGGAATGGAGAATGATGACAGTGCTGTGCAGTATGCCATTGGCCGCTCGGACACTGTGGCCCCTGGTGTGGGCATCGATCTGGAGTTTGATGCAGATGTTCAGACCATGTCCCCTGAAGCATCAGAGTACGAGACCTGCTATGTGACTTCTCATAAGGGTCCATGTCGTGTAGCCACATACAGTCGTGATGGGCAGCTCATCGCCACAGGCTCCGCCGATGCCTCCATCAAGATCCTGGACACAGAGCGCATGCTGGCCAAGAGTGCCATGCCTCTGGAAGTTATGATGAATGAAACAGCCCAGCAGAACATGGAGAACCACCCTGTGATCAGAACTTTGTATGA

Function

GO:

id name namespace
GO:0005848 mRNA cleavage stimulating factor complex cellular_component

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-2958 Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1).

Ensembl:

ensembl_id ENSDART00000132018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008474 lncRNA downstream 11314 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007976 lncRNA downstream 14262 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008473 lncRNA downstream 114429 27705970 ~ 27706600 (-) False XLOC_004171
TCONS_00008801 lncRNA downstream 195574 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007969 lncRNA downstream 195904 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007985 lncRNA upstream 1763 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00007993 lncRNA upstream 251176 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007994 lncRNA upstream 251176 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00008802 lncRNA upstream 299790 28127257 ~ 28390101 (-) False XLOC_004179
TCONS_00008803 lncRNA upstream 369490 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00007975 mRNA downstream 42198 27745618 ~ 27778831 (-) True XLOC_004172
TCONS_00007972 mRNA downstream 81980 27705030 ~ 27739049 (-) False XLOC_004171
TCONS_00007973 mRNA downstream 82540 27706579 ~ 27738489 (-) False XLOC_004171
TCONS_00007971 mRNA downstream 118194 27646675 ~ 27702835 (-) True XLOC_004170
TCONS_00007970 mRNA downstream 118251 27644524 ~ 27702778 (-) False XLOC_004170
TCONS_00007982 mRNA upstream 745 27828212 ~ 27867024 (-) False XLOC_004176
TCONS_00007983 mRNA upstream 745 27828212 ~ 27867111 (-) False XLOC_004176
TCONS_00007984 mRNA upstream 1363 27828830 ~ 27917730 (-) False XLOC_004176
TCONS_00007986 mRNA upstream 7147 27834614 ~ 27838621 (-) False XLOC_004176
TCONS_00007987 mRNA upstream 45276 27872743 ~ 27874116 (-) True XLOC_004176
TCONS_00007974 other downstream 101760 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 317709 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 317897 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1072600 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 1243820 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007992 other upstream 250681 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 763421 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1825223 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1982230 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 2068905 29896372 ~ 29909625 (-) False XLOC_004196

Expression Profile

//