RNA id: XM_034311897.1


Basic Information

Item Value
RNA id XM_034311897.1
length 3910
RNA type mRNA
GC content 0.48
exon number 24
gene id si:ch73-217n20.1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22961578 ~ 22980986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCATGGCGACGTTAACGGATCACCTGAGGGCTATAGTATAATAAGCGCGTGCCTCTATTTAATctagtgtgtgggtgtgtgggtgtgtgtaaaaCGGAGGCATGTACTTTGTGTTACTTCTCAAATTTCTTTAACGGGCTCCAAAGTGCTCAGTTAGAGCTCTGGATATGGCGGTTATGTTGTGGACCTGGGTGTTTTTGGCGTTCTCTGCGCACTTAGTGGtttcGTATACAGGTAGGAAGTGTGGCTCTCCGACTGTGTATCCGGGTAAACAGCTGGAGGAAAGGTATGAAGGGAAGCAGGAGTTTAGTAACAGAGACAGAGTGGTGTATAAATGCGCGCTCGGCTACACGTACAGCTACGGCTCGCGCTTCTCCTTCTGTCAGAACGGACAGTGGAGTCTTCTGGGGATGGAGTGCAGGAGGAAAAGGTGCGGTTCTGCTGGAGAGATACCGAACGGGCGATTCAGACAGATGGGCAACGCCTTCGGGGACAAAGCCTATGCATTCTGCAATGAAGGctACGTTCTACAAGGAGAGCCCGTTAGGGAATGCCTGGTTAACGGATGGCGTGGAACGGTTCCTACTTGTGTAGCTCTTGTGGCTGATTCTGCCTCTGACAGACCAGTAACATGTCCACTActccacaaaaataaaaatgctacgTTTCATGGAACAAAGGCCACATACGAACCCAGAGAGATCTTATCCTACTCCTGCAATGCCGGATTCCGGCAGATTGGCAATAAGAACTATCTGCTGTGTGAGGGAACTGGAAAGTGGAACCCTAGTCATGCAAATTGTGAAATGATCAAATGTGAGAATTTTACCATAGCCAATGGTAAACTACAATTTGGTAATCTAACCTTTAACACGAAAGTAAACATCAGCTGCAAAGATGGGTTCCGCCTCAGAGGGCCGAGTGTCGTCACCTGTGGAGCAGACAGCTCCTGGACTCCAGATCTTCCCACCTGTGAAGAGGTGTTACCTGTACAGGTCACATGCCCGCCCCCCGCCGTGCCTAACAGCAGCGGACAGGACGGATACAAGATGGAGTATGAAGTTGGAGAACATGCCACTATCTCCTGTCAGGAAGACTTCGAGCTGATTGGCTCATCACAGGTCACATGTGGAGCAGACGGCCAATGGCAGGAAATGCCAGAATGTCGTCTTGCTAGAGGAAATTGCCAGCCTCCGCCGTACTTCCCTAATGCCCACACTGAGCACCGTGACCAGAGACACTATGAGCCCAATACTGCCGTGCGTTTCAAATGTAATCATGGCTACCGCATGGTCCGAGGACCGAGCACCATATACTGCAGGAACGGCCAGTGGACTGCCTTGCGTTTGAAATGTGACAAGAAGAAATGCGGCTCGGCCGGGGAGATTGAAAACGGACGTTATCAGTACACAGGCTCTTTGTTCGGGGACACAGCTACAGCCACGTGCAACGAAGGctacCACCTGGTCGGCGTGGGTGTGAGACACTGCAGAGCACATGGATGGGAAGGCAGAGTACCAGTGTGTGAGGCTATCCAGTGCCCTGAGCCTCCACTGGTGCCAGATGCAGACTTGTTTTTCGACACAAGTGGAATAATAAAACATGGTTTCGTGGCATCATACAGATGTCGATACGGCACATTGATCGGCGCTTCAGACATCTTCTGCGCTGAAGATGGCACATGGAGCGCTCCGGCTCCTCGGTGTGAAGTTGTTACCTGCCCTACCCCCAGTGTGAAGCATGGGGTAATAGTTTCTGGCACGAGGCCTCGATACCAATCTGGGAGCTCGGTGATATTCAGGTGCAGCCCAGGAAAAAGATTATTGGGCCCTGATATCATCATATGTGGGGGAGATGGATCCTGGATGCCAAGACTCCCTCAATGTGTATTCTGCCTAATATATCCTTCGCTGAGGGAGTTGGCTGAACAAGAACACAGCTTtaaaactctgaatatggcGGTTATGTTGTGGACGTTGGTGTTTGTGGCGTTCTCTGCGCACTTAGTGGCCCCTAGCAGAGGAGAAACATGTCCACTACTCAAGAATAATAACAAAGCTACATTTCACGGAACAAAGGACACATATAACCCCAGAGAGACCTTATCCTACTCCTGCAATGTTGGATTCCGGCTAAAGGGCAGTAGCAGCATACTCCGGTGTGAGAAAACTGGAAAGTGGAAACCTTCTAATGCGACTTGCCAAATGATCAAATGTGAGAATTTTACCATAGCCAATGGTAAAGTAAAATTTGGTCATCTAAAGTTCAACACAAAAGTAAACATCAGATGCAAAGATGGGTTCCGCCTCAGAGGGCCGAGTGTCGTCACCTGTGGAGCAGACAGCTCCTGGACTCCAGATCTTCCCACCTGTGAAGAGGTGTTACCTGTACAGGTCACATGCCCGCCCCCCGCCGTGCCTAACAGCAGCGGACAGGACGGATACAAGATGGAGTATGAAGTCGGAGAACACGCCACTATCTCCTGTCAGGAAGACTTCGAGCTGATTGGCTCATCACAGGTCACATGTGGAGCAGACGGCCAATGGCAGGAAATGCCAGAATGTCGTCTTGCTAGAGGAAATTGCCAGCCTCCGCCGTACTTCCCTAATGCCCACACTGAGCACCGTGACCAGAGACACTATGAGCCCAATACTGCCGTGCGTTTCAAATGTAATCATGGCTACCGCATGGTCCGAGGACCGAGCACCATATACTGCAGGAACGGCCAGTGGACTGCCTTAGATATGATATGTGAAAAGAAGAAATGCGGCTCGGCCGGGGAGATTCAAAACGGACGTTATCAATACACAGGCTCTTTGTTCGGAGACACAGCTACAGCCATTTGCAACGAAGGctatcACCTGGTCGGCGTGGGTGTGAGACACTGCAGAGCACATGGATGGGAAGGCAGAGTACCTGTGTGTGAGGCTATCCAGTGCCCTGAGCCTCCACTGGTGCCAGATGCAGACTTGTTTTTCGACACAGATGGAATAATAAAACATGGTAGCATGGCGTCATACAGATGTCGATACGGCAAATTGATCGGCGCTTCAGACATCTTCTGCACTGAAGATGGCACATGGAGCGCTCCGGCTCCTCGGTGTGAAGCTGCTACCTGCCCTGCCCCCAGGGTGAAGTCTGGGGTAATAGTTTCTGGTAAAAGGCCTCGATACCAATCTGGGAACCCGGTGATGTTCAAGTGCAGACCAAGATGGAGATTATTGGGCCCTGATGTCATCACATGTGGGACAGATGGACACTGGAATCCAAGACTCCCTCAATGTGTACTCTGATTCCCTTCACAGAGGGGCTGAGAACAAGACCACAGCAGTAACTTCTCATCTGGGATATGTAATACATAAACTTTCTTCATCAATTTTCTGTGACACTTTGCTAAGAAGCTCATGTAATATGGTGATACCATTAAATACAATATCTGATATAGTAATTTTAATATTGATTAAACTGCCATCTTGCTgcacttttattactttaaacATATAATATTGCTAAATATATTCAGTTGTGTGTAAGTACATGAGATTTCTTGGTTCAGGAAACCATATTACATTTTCCTATCTCTTAtatctgtttttaaattgttaaaatgaCCGTGTGTTGCACTTGTACCTGGAGCAGGATTTCTTTCATTGATGGAAATCTTATTCTGGAAAGCAGATTTAATGGATGTTCAAAAATTACACATTCCACTTTCAAATTTGTCCAAAACTATGGACAGAAGCCAGCATCCTTATGCTTATGTACATTGGGATTTAATGGACTTACCCATTGCTGGATTTTCCCTATACATAAGTAACGTAAGTGTCTGAATTTTATTACTTTGAATGTTAAtctgaatgttatttttttaatggattcgCTTACATTATATGTTGACTGTTGTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307467 lncRNA downstream 173599 22742744 ~ 22787979 (-) True G259724
TU307420 lncRNA downstream 304649 22653338 ~ 22656929 (-) True G259692
XR_004579704.1 lncRNA downstream 491825 22467663 ~ 22469753 (-) True LOC117599239
TU307005 lncRNA downstream 537336 22422592 ~ 22424242 (-) True G259337
TU306958 lncRNA downstream 590489 22341861 ~ 22371089 (-) True G259294
TU307564 lncRNA upstream 25374 23006360 ~ 23010550 (-) True G259811
TU307557 lncRNA upstream 29863 23010849 ~ 23012362 (-) True G259809
TU307566 lncRNA upstream 36320 23017306 ~ 23018360 (-) True G259812
TU307595 lncRNA upstream 40375 23021361 ~ 23021570 (-) True G259838
TU307596 lncRNA upstream 41428 23022414 ~ 23022680 (-) True G259839
XM_026921336.2 mRNA downstream 139381 22813004 ~ 22822197 (-) True LOC113530928
XM_026921337.2 mRNA downstream 150957 22801924 ~ 22810621 (-) True LOC113530929
XM_026921205.2 mRNA downstream 199558 22758451 ~ 22762020 (-) True pdyn
XM_026921105.2 mRNA downstream 220024 22733952 ~ 22741554 (-) True LOC113530789
XM_026921134.2 mRNA downstream 319289 22631289 ~ 22642289 (-) True LOC113530805
XM_034312248.1 mRNA upstream 5472 22986458 ~ 23004607 (-) False pfkfb2a
XM_034312250.1 mRNA upstream 5472 22986458 ~ 23004604 (-) False pfkfb2a
XM_034312247.1 mRNA upstream 5472 22986458 ~ 23004604 (-) True pfkfb2a
XM_026920929.2 mRNA upstream 38744 23019730 ~ 23126956 (-) False dlgap4a
XM_034312154.1 mRNA upstream 38744 23019730 ~ 23126956 (-) False dlgap4a
TU306971 other downstream 512151 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1006973 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1606881 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1791880 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 2093620 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 217596 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 782688 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1520747 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1524642 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1806704 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile