RNA id: TU307564


Basic Information

Item Value
RNA id TU307564
length 4086
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G259811
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23006360 ~ 23010550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTAAAGAATGATGGGAAGACATCTTGATGGAAAATAACCATTCACATTCACTAACTTTCTGCTTGGTATCTGAGAAATAATTGGTTGGAAATGTACCTAGTGTAAGTCATGCTGGATGATGCCATGAATGGTTACACCATGGTTGTATCACAATGGTATCAGTGTACATCATAAAAAACCTGAAAACTACCTGAGCCATCCTCATCGAAGCAGGTGAAGGCGTTCCTTATGACGTCCTCGGGATCAGTGCCATTGAGTCGCTCTCCAAACATGGTGAGGAACATGGTGAAGTTGATTGGACCTGGAGCCTCGCTCATCATGCCCTCCAAGTACTCATCTGAGGGGTTCTTCCAAGAGAAGCGAGCATGTCGTGAAGATCCTCCTTATCAATGAAGCCATCACGGTTCTGGTCGATCATGTTGAATGCCTCTTTGAACTCTTGGATCTGGGACTGGTCGAACATGGCAAAGACGTTGGAAGTCGCCCTCTGGGGGCGCTTCTTCGTCGTCTTCCCCTTGGCACGCTTGGCAGCAGACATTTTGGCTGAAGAGTTTTGACCTTTAAAGGAAAGTTGTGGTTCATAAATGTCTAGTACACTCTAAAAGATGTTCCTCAAGAGTTTTTTGGATGGTTAAAAGGATTCTAGATACAACCTTAACCGAAAGAATGCCCTCCAATACCCAGTGATGAATCCTACTGAATTCACTGAAGATCTACAGACTAACTGAAGATCGCTTTGGGATGTTTAATAGTGCCTTTTGTTCTAAGATTGCAGGAATAAGTCCAGGGAGCTGGATTCATGTGGATTTTGAATACATTTGCACACATCTGATAAGCTTCTTCAGGTCTATTGTTGTTGAGGATTGGTGCCGATTTACTATCTGGCTGGGTTTGTATGCTTTTGGGTCAAATCTTGCTGTCGCAGACTAAAGAATTCTTTGATTGTGCATAGACCTCAGTGGTCTTGAGCATTGCTACGACACacatctaaaagccaccaatatgAGGATGGCATTGGATGAGGATGGCCAAACTACAAATATGTTAGTGGCGATGGCAATTCATAAGCGAAACATGcgaatggacagaaaaaaaattctcattacACAAAGTTCACGTTGAAGACATTTTGTGTTTACGTAAGCCTGTTTTTTGAGCTGATTTCTGGATCatgctgattgatgacgtaaagagataatcacaggtctatcattagaggattTTCACGGATATGATTCTGACATGGAGAAAGTTATCACGTAGTCTGCTATTGAATTGAGCcgagattttattgggatcatgtTGTACAGTGCAaaaagtaataatcttaaaagacagCTGTAATTGCACAGTCCAAAACTGACTTAAAGGAGGGAAGCATGTACACTAATGCAATCTCCAGTTACTGGAACATTTGCAACATTTTTGTCAGCTGATAACAAGATAACAAAGTCAAGTGGCTTAAAATTCCTTGCTTGTTAATTATTTATCCAGTACTGAACAGCACCAAACCTCAAAAATTGGGAAGTGGAAAGATTAAATAAGAATATCGGATTATTGGATTTGGCTGAATTCCGAAAGGCTCCATATGAAAGATTGGTTTCTACGTCCCACATAATGTGCTCTAACAGGAAGCCACTTGGGATTGAACTTTAGACATTACCAGGAAGGGCTGTAGGAAGGACTagagacattttctgtattgacttggacttgtctcagagTTACTGCCATTTGTACTTGGATTGTCTTGGAATTATTGATGTTTTTGCTTGGACTTGTCTCATACTTTAGCATTGGTCTTACTAAATATGGACTTGGCCTCGTTGTAAAAATAGCATTCATgctgtcttttctttcctcatgcacaaagtttgacaggaagtaattccttcttctgTACGGCGTCGTAATCATTTATGCAATTCACGAGAAAAAGCCAACTAGCTACAGATTTGATTGTTTTTGGTCTTGATCTTGACTAGGTCTCACTTTCATCTGGACTTGATCTTGAATCTCCTTGACTCCCTTAAGACTCACTAAAATTCACTAAAAACAGCCCTGACTGAGACACTTATACCAAGACGCTTGATAAGTCGATAACATTCTGAAAAACCTCAGTGAGGGAATCACCTAATTGCCAAACGTCAAACAAGTTATGGCATtcatacagtgcattcagagcATTCAGCCGTCTACGACACACCCCGATTGCAAATGAATGATGGCCCATACTAACCACTTACATCTGGCCCACATCCCTCTGTGGAATGACAGCAATGAAGTCATCTGTGTCTGACTGCTGGAACGCAGCCACAACTCAAGCTCATATCGAAAATACACTATCTTAGATGCGATATGGACgggaaataaaatggaaatagaGTACAAGAGTATTAGCATAGCTCCATGATTGTCAAAGTGGGGTTTGTGAAGGGATTTCCTCCAGTGTACATTTTGTTACAATGTTGGAAATCGTTATCAACCTTTTTaatattgagttcttatagatATTAGCTTGTCTGACTGGCCGATTCGCAATAACTccaataaatattcaaaatatcattgtaaacatttaaataataggCCTAATATGTGAATTGTTTGATTGTGTGCATAAATTCAGCCTGTACTGAGCGTATCTATGACattatttacagttaaagatccctggctgcaaaaaagtTTGCTATGACTGACTCTTATTAGCCAAACCTCAACCACATTTGTCCCGAAATTGCATTGCTGCTATGTCCGAGTATCACCACTGTCTGTCATTTGTGACCATtactgtttatttcactgtgaagcTGAAGTCCCCCCCTCCCATGTCACCTCGCATAACCCTAGAGGAAAGTAGAAGAATGTTATCAGATGTTTATTTCTGCTTCAATTACTTCATAGCCACATTCTTCTGAGTTACAACCTGTGCAGATCAGTAGTGCAGGAAAAACTTAAAAATAGACATGCttttttgtgtgcatttgaaaTAGACAtgctttttgtgtatttgaacacCACACTAGTTATAACATGTTATAGTGTTTGATAGTggtattaaatacattattatacaagTCAATATTGTGATCTGTGTTACTTGCACTGTTCATTTGTTTAGCATTTGTGCTTGTCGCAAAAAATGTGTCTAGCTGCACAGCCAAATTCCTGATAAGTGAGGTCTTAGAAAAGTAAATCAGATTCTGTGTGCTCTCATGCTCTTTTTTGGACAATGTTTCTTGTTTATTGAAAAAGCTTTAGTGtagaaataagagaaaacacaagtaaataaaattatggTACGAATACATACAGACCCAAAAAGATTAAATTAGCTGCACAGAAAATAGAAAGGTACGTATAAAGTTGCAGTGTAACCACACATTGAAGATcagagaaataaatgtaaagaagtgaagaaaaaatagTAAAGAAATTGTCAGTAGACCCTTGCAGTATAAACGTAATTTTCTCCAGGAAACATATtgtacttgttttttgtttttccagtgCAGGACGTTTAAACATCTGGCAAGCACTCATGTTTTAATAACGGTCTTCAGCTCACGAATGCATCCGAACACACAGCTGAGACACTTTTCTTAATCATGATGCATTACTACTATATTACATACTACTTTATTccagaaaaataacacaaacgAAGCACTTTCAGAGACTGAGAGCAACATAAACAGCATTGCTATGAACGCTGAGTGTGATGTGTTAAGCTCACCTCGGTGTTGAGTGGCAGCAGGTTCAGCGTGAGCCTCGGTCTCGCTCCTGCTTCTCCCACAGCATGGGCCGTTTGTTTAACGTTTCAGCGTTTTCACCACACCTCCCCGTTCGTGACTCAGCCAATAAGGTCAACATCGTGCCTCAGGCAGCCACACAGGCCTTTAGCCTTACAAGGCAAAGGAATCTGGGAGCTCCTGCCGTCCCACATCCTGATGTTTTCTCGCAAAAGAAACACTCTCTGATGCCTGGAGGAGTCGCAAGGCTGAGGCCTTATTTAGCAAGCAAATGAATACTTATGCTACAGCAGGGCGATGTTTCCTTTACAACAGTGTCATGGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307563 lncRNA downstream 33114 22969883 ~ 22973246 (-) False si:ch73-217n20.1
TU307467 lncRNA downstream 218381 22742744 ~ 22787979 (-) True G259724
TU307420 lncRNA downstream 349431 22653338 ~ 22656929 (-) True G259692
XR_004579704.1 lncRNA downstream 536607 22467663 ~ 22469753 (-) True LOC117599239
TU307005 lncRNA downstream 582118 22422592 ~ 22424242 (-) True G259337
TU307557 lncRNA upstream 299 23010849 ~ 23012362 (-) True G259809
TU307566 lncRNA upstream 6756 23017306 ~ 23018360 (-) True G259812
TU307595 lncRNA upstream 10811 23021361 ~ 23021570 (-) True G259838
TU307596 lncRNA upstream 11864 23022414 ~ 23022680 (-) True G259839
TU307655 lncRNA upstream 169832 23180382 ~ 23181592 (-) True G259897
XM_034312248.1 mRNA downstream 1753 22986458 ~ 23004607 (-) False pfkfb2a
XM_034312250.1 mRNA downstream 1756 22986458 ~ 23004604 (-) False pfkfb2a
XM_034312247.1 mRNA downstream 1756 22986458 ~ 23004604 (-) True pfkfb2a
XM_034311897.1 mRNA downstream 25374 22961578 ~ 22980986 (-) True si:ch73-217n20.1
XM_026921336.2 mRNA downstream 184163 22813004 ~ 22822197 (-) True LOC113530928
XM_026920929.2 mRNA upstream 9180 23019730 ~ 23126956 (-) False dlgap4a
XM_034312154.1 mRNA upstream 9180 23019730 ~ 23126956 (-) False dlgap4a
XM_026920926.2 mRNA upstream 9180 23019730 ~ 23126956 (-) True dlgap4a
XM_026920931.2 mRNA upstream 9180 23019730 ~ 23126955 (-) False dlgap4a
XM_026920930.2 mRNA upstream 9180 23019730 ~ 23126955 (-) False dlgap4a
TU306971 other downstream 556933 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1051755 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1651663 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1836662 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 2138402 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 188032 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 753124 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1491183 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1495078 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1777140 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile