RNA id: TU307655


Basic Information

Item Value
RNA id TU307655
length 1211
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G259897
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23180382 ~ 23181592 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcacaGTTATACAGACTAGGtagctgaaataaatgaaataaacagctaAGTGACAGACCCTCATCATCAGGTTGGATTGGCACTAATTAGGACTGGGCGATATACTCCGAGTGTGGTGTTATCACAATCCTGAACCTTCTTTGGAGAAATATAGCTCGTACATATGAATCTTTTGTGTTAAAGAAATAGTAATAgttcataaaaaaatcaaatttaaacaagtttctaaacGTAGCCGATCAGCCATGACGCGTGTGGTTTCTGATGTTTGCTCCTTTTGGAGCTATAATAAGCAATGGAAATCTATCTGAACCAAAATTTTTCCTCAAACCATGACGCACTGTGACTTTCTGTAATCTGTAAAACATGAATGTTATGAGGGCGGCCATCTTGAATAATGTATGTTATACTGTTTTACCTGGTGCATTGATTTGGAGGTGTATTGATTAGAAAAGCTTTTGGGTGACAGACTTCTATTACTTGTTAGTACTTATGACACTCTGTTAACGAAATAGTAATACTTTGGCAAATGGTCAAATTTACACAAGTTTCCTCTTACGCCAGATGGAGCTACGAGAAGTAACGGAAGTCGGTCTCACCCAAAATGCTTTCTGTAAATATCTTCCTCAAACCACGTACAGTTCTCGGATACAGTGTGACTTCCTGTAATCCATAAACATAAACTGAACTTCACCCTGTTGCTGAATGCTGGAACATTGCTTTAACGTTACGAAGGCAGCCATTTTGGACAGGCTCCGCCTCCCAAAGTTTGAAGATGTAATTGCACTTGAAAGCTAGAAGTGATGTAGATGCTAATAGACAGTATTTCTgtactgaatatactgtactgtgttATATAACCCATTGATTttggtgttattttttaaagattttgggtgattatagacttccattacttaTCAGCCAAGACATTTTGGATGTTTTCTTGAACTGGAACGACAAAAACTAAGAACGGAAATATGGAAATATCTTCCTCAAACCATGATACAGTGTAACTTCCTGTAATCTATAAATCTGAACTAAACATCACAGTGTAGCTTAACCCTGGATCGTTTATGACAGCAGCCATCTGTCAGCTacaatcttctttttttttttttctttcacctctGAAAGTTTGATATTGGAAGTTTAGCTGATGCATAATACCTAATGCGTTGATTTGGCTATGTATTTATTAGAAAACGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307596 lncRNA downstream 157702 23022414 ~ 23022680 (-) True G259839
TU307595 lncRNA downstream 158812 23021361 ~ 23021570 (-) True G259838
TU307566 lncRNA downstream 162022 23017306 ~ 23018360 (-) True G259812
TU307557 lncRNA downstream 168020 23010849 ~ 23012362 (-) True G259809
TU307564 lncRNA downstream 169832 23006360 ~ 23010550 (-) True G259811
TU307824 lncRNA upstream 127423 23309015 ~ 23309614 (-) False e2f1
TU307833 lncRNA upstream 134708 23316300 ~ 23317419 (-) False e2f1
TU307828 lncRNA upstream 151077 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA upstream 151077 23332669 ~ 23335335 (-) False G260021
TU307830 lncRNA upstream 151077 23332669 ~ 23335335 (-) True G260021
XM_026920929.2 mRNA downstream 53426 23019730 ~ 23126956 (-) False dlgap4a
XM_034312154.1 mRNA downstream 53426 23019730 ~ 23126956 (-) False dlgap4a
XM_026920926.2 mRNA downstream 53426 23019730 ~ 23126956 (-) True dlgap4a
XM_026920931.2 mRNA downstream 53427 23019730 ~ 23126955 (-) False dlgap4a
XM_026920930.2 mRNA downstream 53427 23019730 ~ 23126955 (-) False dlgap4a
XM_026921349.2 mRNA upstream 17 23181609 ~ 23186306 (-) True rprd1b
XM_034311678.1 mRNA upstream 10665 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA upstream 16990 23198582 ~ 23240346 (-) True LOC113530288
XM_026920910.2 mRNA upstream 63137 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311580.1 mRNA upstream 127307 23308899 ~ 23317464 (-) True e2f1
TU306971 other downstream 730955 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1225777 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1825685 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2010684 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 2312424 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 16990 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 582082 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1320141 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1324036 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1606098 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile