RNA id: TU307769


Basic Information

Item Value
RNA id TU307769
length 1847
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC117599309
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23371744 ~ 23383653 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAGGCAATGATACAATAAATCCCTCCCTCTGTGCACAAACCTCCTCCCCCACTGCACACTAATAAAACTGGAAGTCAGATCGCTCTCTCAGGACAAGCTGCATCATCTTCACAACTTCACTCTTCTGCACTCCACCAGCAATGAGGCCACTAGTGACTCTTGTGTTCATCTGCATGCTTTTACCCAAAGcTGCTGGAGAACTGAGCTGCTATACCTGTAATCCCCCTAACTGTGAACAATATGTTAAGGAGCCCTGTCCTTCAGGTTCCGATCGCTGCCTCACTGCATCAGctGCTTTGTTAAAGAAGAGGTATATTGTGAAAACTTGTGAAACAAAGCAGTTCTGTGACACGCATCAGTCATCATTAGCAGGACTTGTCCTTGAAAATGTGGAGTGTTGTCAGGAGAATCTGTGTAACGGTGCTGAGAGCTTcacactgagtttcctcctcATGTTcatccctctgctctcctccatcctcttctACTGAGCTCTGAGGAAAAAGCTCACTTAAAGCTTTATCTACAACATGATtacaaaataagaaagaaaaatgaaatgattctcTTTTTCCACTTCACTGTACTGCCATTTATAACATAAGTTCTGTTCTTTGTGTTTGTCCAGTTAATTTCTCTGTAAAAACATGTGCACTTCTTCCCCATGGTAGCAGCAGGAGCAGTTTGGTAGCAGCAGGAGCAGTATATTAGCTCATTAGCTGTGGTAGCAGGTCTCATTAGCATATACACtgttcttcatatttatttaatttgctaAGCTACTGTCAAGTTTGTTTGGCGGGGGTATGGCATATCTCAGATACTATCGGCTGTTGTGAaaactctgacttcctgtttcaaaagggaAATctagtcatgtgaaaaaaataggACACCCCATGAAAGCCTGTAATGACATATATTTCTTAGCCTACCAATGTTCCTGAGGTGCGAAAAAAAGACTTTCCTATTAATATAATCTAGTGTCAAGTGTCAAGAGAGAGACTCGAGTCAATAATCACTAGATATTTCACTCCTGCACATGATGTATTTAGCTGAGAGGCCAATCAGATATTAAGCATCCAGTGCCTAATATATTCTAATACTACTAAACTACatattcctcaactttattcaACTTGTATCTccctttttatcattttatctctAACTTTTATCATactgctttcatttttatgcaATAACAATTTTATTCACAATAAATGTCCAATTTGCACAGCTTACTAGTGTGTCCCTAGAGGAACCTAGCATTTAAATTTCATGACAATAGGTTAACATTAACCCTGTTAAATATCTGCTGaaatatgattggctgatggcagcCACGTTTTTGAGTCATCAGATCATCATCAATGACACAGATATGCACTATGCCAAATTTCAGATCATTAGGACTTACAGTTCCTGAGAACAAGTTATTTGACCTTAATGCCACCCCTACGGATGACCACACCCTAAACTTTGCCATATTACTGGTGGCCATATTATTCAgaaatctcaacatgttttcGGTAATTATTCAGGTTCACATGCTCCTGGGTAGATTGACACTGAGTTCAAAAGGTCAAAAATCCTAGGATTAGTTCACAAAAGTAACTTTcatatattatgcaaattatcctAAAATAAAACTGGGCAGAGATAAATTGTTCTGAAGACTGTTTTGGATAAGCAAAGGAATCAGatgaaaaaagcagcttgtttgCTGGGTTTGGGCACAGAGTAGTACCTGCTGATCAAGTgaagcattttgttttgttttatgtctaATTCCTTGGAGTGTAGAGCCAAAGGTGTAGGTTTGATTTTGACATTGGTGGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307756 lncRNA upstream 9457 23344862 ~ 23362290 (+) True G259978
TU307745 lncRNA upstream 22810 23332680 ~ 23348937 (+) True G259968
TU307742 lncRNA upstream 36412 23332680 ~ 23335335 (+) False G259968
TU307732 lncRNA upstream 63155 23307755 ~ 23308592 (+) True G259962
TU307418 lncRNA upstream 93838 23277434 ~ 23277909 (+) True G259690
TU307813 lncRNA downstream 85173 23468826 ~ 23469057 (+) True G260009
TU307815 lncRNA downstream 90260 23473913 ~ 23474444 (+) True G260011
TU307893 lncRNA downstream 143775 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA downstream 170943 23554596 ~ 23555077 (+) True G260083
TU308085 lncRNA downstream 443239 23826892 ~ 23827631 (+) True G260222
XM_026920165.2 mRNA upstream 40481 23319361 ~ 23331266 (+) True znf341
XM_026920166.2 mRNA upstream 40481 23319361 ~ 23331266 (+) False znf341
XM_026921432.2 mRNA upstream 176492 23186491 ~ 23195255 (+) True tti1
XM_034311676.1 mRNA upstream 192424 23172257 ~ 23179323 (+) False tgm2a
XM_034311677.1 mRNA upstream 192424 23172841 ~ 23179323 (+) True tgm2a
XM_034311598.1 mRNA downstream 24156 23407809 ~ 23411399 (+) True LOC113530556
XM_026921236.2 mRNA downstream 31164 23414817 ~ 23421228 (+) True LOC113530872
XM_026921317.2 mRNA downstream 38541 23422194 ~ 23433656 (+) True LOC113530918
XM_034311581.1 mRNA downstream 56843 23440496 ~ 23443625 (+) True LOC113530555
XM_026921319.2 mRNA downstream 63976 23447629 ~ 23450712 (+) True LOC113530919
XR_004579671.1 other upstream 692197 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1059859 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1829493 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 2140876 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 2464497 20903105 ~ 20907250 (+) False ubxn10
TU307780 other downstream 3885 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 648574 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 884924 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1241284 24624937 ~ 24634545 (+) False ddx58

Expression Profile