RNA id: TU307824


Basic Information

Item Value
RNA id TU307824
length 600
lncRNA type sense_over
GC content 0.36
exon number 1
gene id e2f1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23308899 ~ 23317464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTGATCCTCCTCATTTCCCATTTAATACAGGTTCCAATTATCCATTATGTGAACGTGATTTCTTCAACTGCTACCTAAAACTAATGTAACAAAAGTCcctaattaaatatttaatacaaggAATACCATTTATTCTTGTaagtatattcagtataaaaaaAGAACTAAAGGAGCTATGAGGAGCTGCACAGTGCTTTGGTTTTGGGGGCGGTGAAACATTTGAAGGGAATTTCTCATTAAAAGTAGGAAAGGTCCCTTGTTTGGAGGTTAAATGtatgatgtcatcagtgtgcGCCTCTAACGTGTTGCTCTGGAGTGTCTTAAAATTTCCCCTCATACAGGAATTTAGCATTTCAGTGcagaaaattaaacacagtGGTTTATTTGTTAAGAATATTCAAACGTTTGCTGCAAGCCCGTTCAGATTTATgccttttcttttcagaaatataaagaGCTTTGTGTGGAGTGgttaaaaaggaagaaatcaCGATCACTGTAGTTCAGTTAACGTTTAGCTATATTACGtcattatgattttatttcatcGCTTTAGTCTCCCAGAAACAGGCATTTGAACTGCCGTTTATAACCGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307655 lncRNA downstream 127423 23180382 ~ 23181592 (-) True G259897
TU307596 lncRNA downstream 286335 23022414 ~ 23022680 (-) True G259839
TU307595 lncRNA downstream 287445 23021361 ~ 23021570 (-) True G259838
TU307566 lncRNA downstream 290655 23017306 ~ 23018360 (-) True G259812
TU307557 lncRNA downstream 296653 23010849 ~ 23012362 (-) True G259809
TU307833 lncRNA upstream 6686 23316300 ~ 23317419 (-) False e2f1
TU307828 lncRNA upstream 23055 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA upstream 23055 23332669 ~ 23335335 (-) False G260021
TU307830 lncRNA upstream 23055 23332669 ~ 23335335 (-) True G260021
TU307873 lncRNA upstream 159187 23468801 ~ 23469073 (-) True G260055
XM_026920910.2 mRNA downstream 29505 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311678.1 mRNA downstream 68668 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA downstream 68669 23198582 ~ 23240346 (-) True LOC113530288
XM_026921349.2 mRNA downstream 122709 23181609 ~ 23186306 (-) True rprd1b
XM_026920929.2 mRNA downstream 182059 23019730 ~ 23126956 (-) False dlgap4a
XM_034311749.1 mRNA upstream 21635 23331249 ~ 23359264 (-) True itchb
XM_034311687.1 mRNA upstream 84058 23393672 ~ 23395815 (-) True LOC113530415
XM_034311899.1 mRNA upstream 213799 23523413 ~ 23527413 (-) True LOC113530552
XM_026920812.2 mRNA upstream 237811 23547425 ~ 23556299 (-) False abce1
XM_034311948.1 mRNA upstream 237811 23547425 ~ 23556286 (-) True abce1
XR_004579695.1 other downstream 68669 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 859588 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1354410 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1954318 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2139317 21168986 ~ 21169698 (-) True G258580
TU308180 other upstream 454060 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1192119 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1196014 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1478076 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 1571344 24880958 ~ 24883145 (-) True G260947

Expression Profile