RNA id: XM_034311580.1


Basic Information

Item Value
RNA id XM_034311580.1
length 4644
RNA type mRNA
GC content 0.44
exon number 8
gene id e2f1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23308899 ~ 23317464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAGGATTTGGCGCGTGAAAATCAGCTCCTCTGTTTCCGATCAGctggaacaacaacaaaaacaaccgCGCGCGCGACGCCGAGGCGGAAAAGCCCGAGCTGATCTCCTAAACCCTGGACACTTAAAGCGGCTATAAGCAACATCTGAGCGCTTCTGGAGCTTTATATTTACACCTGCGAGCTTTGGATGATTGTTTTGTCCTTTGTTTTTTCTGCTAAAACTTCCTGAATGAGCCGAGAACCAGCCCGAGCTGCAGGAAGAGCTGAAAGAGAAACCTTCTTTGTGCTGTCAGATCCGCTTCTTCTGCATTTTCTCTAAAGAATTAGTTGTTTTTATTCCTAGAACCTGCTTCTGCATGAAAGTTTTAGCGATTGCATTTTGAAAATGGGCAAAAAGTTCATCTTTTTAGGCTTTTTTGGCCTGTTTCTCTTTCCAGTGCTTGTTGCCGAATAGGCCTGAGCTTGTCTAAAAGCTGACGTGATTATAACTGATACATTATAAATGAtaatatgcattaatattaGTGTGTATTGGTGGTggttttttgttgctgtttttatgcTTAATCTCTGAACTGCATGTGTGTTCAGAGATTAGTGCCAAAACAAAGGAGACTTGAAGAAATTCATTACAATTAAAGTTAGATTGCAGGAATATTGAATGATGAAAGCTACAAGTCTGGAGTTGTAACAGGTTCATAAAGTCAACCTGAAGATCTGAAGCCAGAGATTTTAGACTTTTGTAGTGTTCTGAAACTACAAAAAACATTAAGCTCTTCAGATTAGTGATCAAATGGGTCATCAATATCAGTTTAAAAGCATACAGCTGAAATCGAGTGTAATTTTACTATTTaactcctcctcatcatcatcatcatcatcatcatcatcatcatcggtGGAGCTCTGAGACAGGAAGCTGATATAACTGGTTATTATAAGACAGGGTGAAAGGTCACATCTCGGATGGCGGACACGGTGGTTTCTGCTCACAGCTCAGAGGATCTCCTGGCTGACTTTGAGACTCTCCTGAACAGTGGCAGCATCGACCTGAGCGCAGATCATCAGATCGTCATCATCTCTCCAGCGTGCGGCGGTGTGGAGCTCCTCCAGCCCCGGAGTGCCGGAGCGGATCTGCTGCTGTTCTCCACCCCACACAGCACCAGCCACCACGGGCGCATAGCAGCAGAGAGACGCCCAGCTGCCGGCTCGCCACCGgtgaagAGGAAGTTGGATTTGGACAATGATCACCAGTACATCAGCACTACCAGACCACCTCCACCATGTCCTGCTCCTCCTGCTACGCCCGGACGTcccagagTCCCTCGTCTCAGCACGGAGAAATCACGCTATGACACGTCCCTGAACCTCACCACCAAGCGCTTCCTGGACCTGCTGGCTCAGTCCCCGGACGGCGTGGTGGACCTGAACTGGGCCTCGCAGGTGCTGGACGTCCAGAAGAGACGCATCTACGACATCACCAATGTCCTAGAGGGCATTCATCTCATCTCCAAGAAATCCAAGAACAACATTCAGTGGCTtggtaACCGTATCGACGGCGCCTCAGTGGCTCGCTATCAGGAGTTACAGAGAGAAGTGTCTGAACTGTCTGATGCTGAAGACAAACTGGATGAACTCATCAACAAGTGCAGCCTGCAGCTCCGCCTCCTCACCGAGGACTCGGAGAATAAGACGCTGGGGTATGTGAGGTGTCAGGACCTGCGCAGCACCGTGGACCCTCCGGATCAGATCGTCATCGTGATCCGAGCCCCACCTGAGACGCAGATGACCGTCACCGAGCCCAGTGAGGGGTACCAGATCTCCCTGAAGAGCACCAAGGGTCCCATCGACGTGTTCCTGTGTCCTGAGGACAGCTCTGGAGTTTGTAGTCCTGTAACAGGCTGCAGTCCCGCAAAATCATCCACTCACAGCCCTCCTCGTCCGGCCTCGTCCGCACAGGAAGCGAGCTCATCGACGCCAGCGACGATCCCGAGCGCCTCCCCGCTTCCTTTAGTGAGCGAGACAGAGTCACTGCTGGACCCGTTCTCAGGCATCAGTGAGATGGCCGACTTTGACCCCTTGACGCTGGGATCGTCAGACTTCCTTTTGGATCGGGCTGGTCCCGGTTCCGGCTCGGATCCCTTCAGCCTGCCGATCGACAGCTTCATCAGCTTGTCTCCGCCGCACACGCAGGACTACCACTTCGGTCTGGAGGACCACGAGGGCATCAGCGAACTGTTCGACTGCGACTTCACCGACCTCGGCCCTCTGTTCTGAGAGTCTCTGTTCGTATCGTCCCTCTCCTTCACTTTATCACTTAGCACCATGCCTCTGTCAGTGGGctaaaaatattggcacccattTTTAAAGGCACTTTTTCAAAATTtgtctgacaaaaaaaatatatatttccacTCAGctggaagaaaaggaaaaactgaCTCCCGTTTGCATCTTCAGCACTTCCTGCTTCATCATGCTAAAAATTGCTGCAGCTCAGAGCTGCCTTTCGTCCGTCACCAGCTCTTCACACCAGCCATCTCCGAGCTCTGCTTCTCTaatcagtttaatttatttatataaaaaaaatatatcgtaatcttgtttcttttattattgtttaaatttCGAGGTAGATGTAAAGAGGGTTGTGTGTTATGTGCATAGAGaggtgtatatagtgtgtgtgtttgtgtatgtgtagagtttTGAATCGTAAGGTTTTGCTCAGGTGAATAGACGAGTCCTGCGTTACGATACGTGTTTTATAACGCGCCCTCGTCGATCTGTCCTTGTGCGTAACGGACGAGTGGCCACTTGCAGCGGTAGAGAAGTGTGTAGTGCTTTTCTTTCCTAGCTTGCGAAGTAGCTAGCAGCGCACACTGGCGAGGTTATTTTATCCAACATGTACAGATGTAGTCATGGTTGTCTACGTAAAACcctacgttaaaaaaaaaaaagcattagattgcactgcattctgggtaGTTGATCCCTCGCCCTTCAGCCGAACTGATAACGTAACAAAAATTATCGTTAAAATGGTGACGGTGATATAACCATGGGAAAGTTGACAAGGGCGTGTTATAAAAAGTATTGGCACCAGGCTTattagtgtgtttgtggttgttgCTTGAATTcatgcaggatttttttttggagtacGTTTACAGAATGTCTGTGCGTTGGCGGTGGTTTTTCATTGGTTGATTTCCGATAAATCTTTTCAGTCATTCGTAATACAGCTTAGCGTGTGCTGATGTTAACATTTCACCTCACGATGATCGCAAAATCTTTCCACACACTTTACAATATAATCGTAGCATTGCATTTCTAAGCATTCGATATATCTATAATGAGTATCATAACATGACATCATATAACTGATAATCAGCAAAAGCCTAAATGCAGCACTGCTATATATATGTGGGTGGGGCGATATGACAATAaatcatatcacgattcttGAAAGTATTTTTACAATACATGATATGTAAAAACAAATACTTAACCCTGAaagggaggaaaaaataaaggtttaaagattttacaatttaaaaggTTAAGTACACAATTTTATCATCACATAAGCTCCATGTAGTCAGTTtgtgatttataataaaaaatgtaatacaaaGATATCACGATATcttagaaaagtgtattgtgaatgtgaataatttatcatgatattgatattatattgtcatatcgtCCAGCCCTACTGCCATAATGATCCACAAGAACGTCATAGCTCATCAGATTCCTTTCAATTGTAAATGTAACCTTCAtccaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgtgatttattattttttttcgaTCTCACACATCTTGCGTCCAAATCTTACTGTAACTCGCCTGATCCTCCTCATTTCCCATTTAATACAGGTTCCAATTATCCATTATGTGAACGTGATTTCTTCAACTGCTACCTAAAACTAATGTAACAAAAGTCcctaattaaatatttaatacaaggAATACCATTTATTCTTGTaagtatattcagtataaaaaaAGAACTAAAGGAGCTATGAGGAGCTGCACAGTGCTTTGGTTTTGGGGGCGGTGAAACATTTGAAGGGAATTTCTCATTAAAAGTAGGAAAGGTCCCTTGTTTGGAGGTTAAATGtatgatgtcatcagtgtgcGCCTCTAACGTGTTGCTCTGGAGTGTCTTAAAATTTCCCCTCATACAGGAATTTAGCATTTCAGTGcagaaaattaaacacagtGGTTTATTTGTTAAGAATATTCAAACGTTTGCTGCAAGCCCGTTCAGATTTATgccttttcttttcagaaatataaagaGCTTTGTGTGGAGTGgttaaaaaggaagaaatcaCGATCACTGTAGTTCAGTTAACGTTTAGCTATATTACGtcattatgattttatttcatcGCTTTAGTCTCCCAGAAACAGGCATTTGAACTGCCGTTTATAACCGTGTTTGTACAGCGAtagatgaatttattttaattatttttgttattaatatttctctctatttatttttttggggtCCTGAAATGGTCCTCATagtgtagtcttttttttttttttttt

Function

GO: NA

KEGG:

id description
K17454 E2F1; transcription factor E2F1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307655 lncRNA downstream 127307 23180382 ~ 23181592 (-) True G259897
TU307596 lncRNA downstream 286219 23022414 ~ 23022680 (-) True G259839
TU307595 lncRNA downstream 287329 23021361 ~ 23021570 (-) True G259838
TU307566 lncRNA downstream 290539 23017306 ~ 23018360 (-) True G259812
TU307557 lncRNA downstream 296537 23010849 ~ 23012362 (-) True G259809
TU307828 lncRNA upstream 15205 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA upstream 15205 23332669 ~ 23335335 (-) False G260021
TU307830 lncRNA upstream 15205 23332669 ~ 23335335 (-) True G260021
TU307873 lncRNA upstream 151337 23468801 ~ 23469073 (-) True G260055
TU307874 lncRNA upstream 156586 23474050 ~ 23474641 (-) True G260056
XM_026920910.2 mRNA downstream 29389 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311678.1 mRNA downstream 68552 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA downstream 68553 23198582 ~ 23240346 (-) True LOC113530288
XM_026921349.2 mRNA downstream 122593 23181609 ~ 23186306 (-) True rprd1b
XM_026920927.2 mRNA downstream 206147 23019730 ~ 23102752 (-) False dlgap4a
XM_034311749.1 mRNA upstream 13785 23331249 ~ 23359264 (-) True itchb
XM_034311687.1 mRNA upstream 76208 23393672 ~ 23395815 (-) True LOC113530415
XM_034311899.1 mRNA upstream 205949 23523413 ~ 23527413 (-) True LOC113530552
XM_026920812.2 mRNA upstream 229961 23547425 ~ 23556299 (-) False abce1
XM_034311948.1 mRNA upstream 229961 23547425 ~ 23556286 (-) True abce1
XR_004579695.1 other downstream 68553 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 859472 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1354294 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1954202 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2139201 21168986 ~ 21169698 (-) True G258580
TU308180 other upstream 446210 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1184269 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1188164 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1470226 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 1563494 24880958 ~ 24883145 (-) True G260947

Expression Profile