RNA id: TU308296


Basic Information

Item Value
RNA id TU308296
length 2575
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G260409
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24158866 ~ 24161640 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAACCTTTAATAAAACTTCTGACTACATGTGAGATAATGCCAAAGAGAAAacttttatttagtaaaaatttaaactacacacacacacacacacacacacacacacacacacagaaagaaacagtTCCAAACGTCACAACAGTTTATTCAGACTGCTATATTATCATCACCTTTATTAAaccctgaaaacacacacacacacacacacacacacacacacacacacacacacacacacactccaggtcACTTGATTTTTACTGCGTTTCAAATCTCTGTGGATCAACGAGAGGCGGGGCTTAAGTTACATTTGATCACATGATGTAACGCATcacaaaatgtttctttttgtttcttcgattcagtacaaaattctACTTTATATTACATGATAGCagtttagcaacattagctaagctagccagctagctaagcTTTAGCCAGGCATTTATTTAGCTTAGCCGATGTTAACATTACCTCTGTAGCATTATAGCGCGGAACTACAGTAAACTAAATATACTGTGTAATCAAATCCAGTAGCCATGATCgctaaaaaaatagtttaacattttttttttttagttaaactCCAatttttccaggttatttgttgAATAAAAGCACAGCTGTGAGGCTGAACACATACTTCCACATGTTTACATACAATCACACTtaacattaactagctagcGAGCAAAATCACTCAGCTAAAGTTAGCTCGCATAAGAtggctaacatgagctagctgTCTACATTGATATGATATACAGTACGTAGCTACCATTGCGTTGTGGTGAAATGCGTTCACAAAGATTTTCTCGCACTGTGATTGGATGAAGCAGCTGCCgctcattaattattcatgagTTTTCCCAGCTTATGCTAGGACGTAATATTGTGTTAGGGGATTTATGGTGGTGTGATCGTATGTCactttaagctccgcccttgCAGAGACGCTGTGCAGAAGGACGTGTGTTGGAAATGAAACGGAATTCCAACATCCTCGGATCAGACAATGGGATTATCTTTGAAAGTCAGGAAGGTTTTAGTGTTAGAGAGTCACAATGAACTATTACACTcacattattatgattattattattattatctagtTCTGGATCTGGATCTTTCCTTCTGAATGCAGCATTCATGTCACATGGGGAGTCGGAATTTTGCAAGCTTGGACGCGAGGCAACTGCCAGCATAAACACACTGTTCTTCTGTGAAGAATCTTGTTGgaatattactttatttttcatgaattagAGCTGATAAATTTCACCACCTCCTTCCTGATGATTAGGAAGATCTCATGCTAAtaaacaaccagaaaaaaagtttttcaaggaatgaaatggaaaaacgTGAACGCTAAAAGCTTCGGCATACTTAATGTGGAGACGAGACAGCTTCACGAGCTCCAGTGCTGCAGGTGGCGCCGTTAAAATTACACAACAGCTTCCACTGTGACAGAAAAGCTGCCGATCCTCCTTTGTTTCTAACGACCAATCACGAGCTTGGTTGAGTAGCGTGATCGCAGCTACGCACGACGTCCATTTGCTTCGCGATTACATGCACGAAGTGCGCTGAGGCTCCCGGAATAACGGGACGTTTTCCGATCTTCACAACGTGACAAGAATGCAGCATGAGTCCTGTTTCCTTCTCACTTTAATCAACAAATTTAATCATCAACGCTTTCGTAACACGCACGTGACAGTTTGCATAAAAATGTGAACATACACAACATCCTTTCTCTAATCTCGCAGGACAGAATTAGAGAATTAGAGAAtctaactgacatttcagatgACCAATCAGAGACTACTTTCAGAAATCACTCCAAACTCCGCCCACCAAACGTGTCACGGTTGATCGTCTATGTTTGCGGTAAGTGGGACTGTGTGTATTTCGTTTTTAGCCAAACTGACACTTTCACAAATTTCACATATTCCtgagtgtgttagagaaggAGTAAAGGAGTAAAGAAGGAGGACTGGGACATGATCTGGTGTCAAGGTGGGAAATGATCTGGGGTCGAGATGGATCATGATCCAGTGTCGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATGTGTCGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCCGGCATTGGGGTGGGAATATGATCCGGTGTTGGGGTGGGAATATGATCTAGTTTTGGGGTGGGAATATGATCCGGTGTCAGGGTGGGAATATGATCCAGCATTGGGGTTAGGTATACGATCCATTGTTGGGGTGGGAATATGATCCAGCGTTAGGGTGGGAATATGATCGGAGATCGAGCTGGGAATATGTCGGAGCTCAGTGGTGCTGATCTCGGGTTTAGTGGTGAGTGAGTGTCTGAAGGCTAAAGCAGAGATGAAAGAAGAGATGAGACTCTCCGTCCCTGCTCGAGTCGCGCTGACGGAGGGGACGCTCGTCCACGTGGGCGGAGTCTCACAGCTTGGCTTTGCCTGGTTGTAGCTGCAGGTTCTGGAGCTTCATGGCCATTCCCATGTTCCCTGTGACCTTCAGCTTTCCCTGGAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308326 lncRNA upstream 12527 24145990 ~ 24146339 (+) True G260434
TU308323 lncRNA upstream 18247 24135794 ~ 24140619 (+) True G260431
TU308322 lncRNA upstream 26908 24131718 ~ 24131958 (+) True G260430
TU308299 lncRNA upstream 128531 24023376 ~ 24030335 (+) True G260410
XR_004579725.1 lncRNA upstream 145862 24010675 ~ 24013004 (+) True LOC117599260
TU308336 lncRNA downstream 8730 24170370 ~ 24171029 (+) True G260441
XR_003403195.2 lncRNA downstream 187337 24348977 ~ 24351472 (+) True LOC113530917
TU308598 lncRNA downstream 238944 24400584 ~ 24453510 (+) False rnf146
TU308545 lncRNA downstream 243404 24405044 ~ 24430691 (+) True G260592
TU308624 lncRNA downstream 315926 24477566 ~ 24479800 (+) True G260632
XM_026920901.2 mRNA upstream 27759 24091122 ~ 24131107 (+) True slc1a7b
XM_026920900.2 mRNA upstream 27759 24091122 ~ 24131107 (+) False slc1a7b
XM_026920938.2 mRNA upstream 103342 24048016 ~ 24055524 (+) True gpx7
XM_026921140.2 mRNA upstream 190980 23951661 ~ 23967886 (+) True mcoln3b
XM_034311701.1 mRNA downstream 5080 24166720 ~ 24184554 (+) False LOC113530931
XM_034311699.1 mRNA downstream 5081 24166721 ~ 24188371 (+) False LOC113530931
XM_034311698.1 mRNA downstream 5082 24166722 ~ 24188371 (+) True LOC113530931
XM_034311700.1 mRNA downstream 9424 24171064 ~ 24188371 (+) False LOC113530931
XM_026921040.2 mRNA downstream 137956 24299596 ~ 24306661 (+) True cltrn
TU308306 other upstream 126142 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 769552 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 775213 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 775213 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1479316 22671625 ~ 22679550 (+) False LOC113530514
TU308384 other downstream 106937 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 463297 24624937 ~ 24634545 (+) False ddx58

Expression Profile