RNA id: TU308322


Basic Information

Item Value
RNA id TU308322
length 241
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G260430
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24131718 ~ 24131958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctaggcagaaaaaaattgacatttgtacatattttcagaaaaaactGATGCTGGATACAGATGTGTTTCTACATGACTTTGTGAAACCGAACAGCAGAATAATTACCATGTTTTATGCAAATGTTTTTGATGAATTTGTGCAGCTGAGTGTGAAAAAGCACAtgtatttcagtgtttctgcCTGACTGAGGTGTAGAAGGTCAGCGTAAAAAGACAAACTGAACCTGCAGTAAAAGACGAC

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308299 lncRNA upstream 101383 24023376 ~ 24030335 (+) True G260410
XR_004579725.1 lncRNA upstream 118714 24010675 ~ 24013004 (+) True LOC117599260
XR_004579726.1 lncRNA upstream 128337 24002549 ~ 24003381 (+) True LOC117599261
TU308096 lncRNA upstream 213327 23917881 ~ 23918391 (+) True G260232
TU308080 lncRNA upstream 262162 23867651 ~ 23869556 (+) True G260217
TU308323 lncRNA downstream 3836 24135794 ~ 24140619 (+) True G260431
TU308326 lncRNA downstream 14032 24145990 ~ 24146339 (+) True G260434
TU308296 lncRNA downstream 26908 24158866 ~ 24161640 (+) False G260409
TU308297 lncRNA downstream 26908 24158866 ~ 24161640 (+) True G260409
TU308336 lncRNA downstream 38412 24170370 ~ 24171029 (+) True G260441
XM_026920901.2 mRNA upstream 611 24091122 ~ 24131107 (+) True slc1a7b
XM_026920900.2 mRNA upstream 611 24091122 ~ 24131107 (+) False slc1a7b
XM_026920938.2 mRNA upstream 76194 24048016 ~ 24055524 (+) True gpx7
XM_034311922.1 mRNA upstream 163832 23951660 ~ 23967886 (+) False mcoln3b
XM_026921140.2 mRNA upstream 163832 23951661 ~ 23967886 (+) True mcoln3b
XM_034311701.1 mRNA downstream 34762 24166720 ~ 24184554 (+) False LOC113530931
XM_034311699.1 mRNA downstream 34763 24166721 ~ 24188371 (+) False LOC113530931
XM_034311698.1 mRNA downstream 34764 24166722 ~ 24188371 (+) True LOC113530931
XM_034311700.1 mRNA downstream 39106 24171064 ~ 24188371 (+) False LOC113530931
XM_026921040.2 mRNA downstream 167638 24299596 ~ 24306661 (+) True cltrn
TU308306 other upstream 98994 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 742404 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 748065 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 748065 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1452168 22671625 ~ 22679550 (+) False LOC113530514
TU308384 other downstream 136619 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 492979 24624937 ~ 24634545 (+) False ddx58

Expression Profile