RNA id: TU308533


Basic Information

Item Value
RNA id TU308533
length 695
lncRNA type intronic
GC content 0.44
exon number 2
gene id G260581
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24305229 ~ 24306670 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgggaaagaaatttatttttggaactggaaacatttacatataaagagacatgactgttttttttctgttgttgggATTGGTGTAAAGTACAggaagtgtttttgtgtgtaagaATGTAACTGtgaagtttttaaagaaaaccatCTTGGAGTCGACTGATGCTCAAGGTCtcagtatcagaaaagaaaagtggTATCGTGCCATATTTACTTTTTACCCatatttaccaagggtgccaataattctggagctgagtGTGAAATAAAGGCGAGTAAAGCCGGACTGCTGTTACTAGTAACATTAGCTCAAACTTTTGCATTACATTCCTGATAAATGTTAAAGTCCGTCAGGGTTTAGAGCTTGGTGAAGCGATCATCATCAGCAAATCCTCGGTTGTTAAAGCCGTCTTTCTCCTTCAGAATCTCACACATTATTCCGTTTCCTGTCACTctttctccggtttcctcctcttcctcggACTGTTTGCGCTTCGCCCgtgtCCTCTGGATGAAGGAGGTGAAGAGCATGGCGATGATGCCGACACACACGAGTCCCATCACCACGCCGAACACGATGAGCCACGGCTGTGTGTCGTACTGCATCGGAGCCGCCAGAGTCGGGTTTATTCCCACAAACTCCAGCGTCTGATCCGTCAGCAGGAACGCGTTATTGATCCGATTCCTCGAATTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308490 lncRNA downstream 79271 24213334 ~ 24225958 (-) True G260548
XR_004579699.1 lncRNA downstream 165123 24136489 ~ 24140106 (-) True LOC117599232
TU308266 lncRNA downstream 329646 23974201 ~ 23975583 (-) False LOC113530810
TU308247 lncRNA downstream 424901 23880087 ~ 23880328 (-) True G260371
TU308245 lncRNA downstream 429913 23874519 ~ 23875316 (-) True G260369
TU308888 lncRNA upstream 43585 24350255 ~ 24435098 (-) True G260823
TU308898 lncRNA upstream 65386 24372056 ~ 24435869 (-) False G260823
TU308915 lncRNA upstream 75848 24382518 ~ 24383732 (-) False LOC113530517
TU308907 lncRNA upstream 80836 24387506 ~ 24409038 (-) False G260823
TU308927 lncRNA upstream 141888 24448558 ~ 24453499 (-) True G260833
XM_034311814.1 mRNA downstream 9482 24273737 ~ 24295747 (-) True reps2
XM_034311815.1 mRNA downstream 9483 24273737 ~ 24295746 (-) False reps2
XM_034311813.1 mRNA downstream 9483 24273737 ~ 24295746 (-) False reps2
XM_034311810.1 mRNA downstream 9484 24273737 ~ 24295745 (-) False reps2
XM_034311812.1 mRNA downstream 9846 24273737 ~ 24295383 (-) False reps2
XM_034311583.1 mRNA upstream 15002 24321672 ~ 24340160 (-) False LOC113530540
XM_034311582.1 mRNA upstream 15002 24321672 ~ 24340160 (-) True LOC113530540
XM_034311584.1 mRNA upstream 16945 24323615 ~ 24340163 (-) False LOC113530540
XM_034311958.1 mRNA upstream 45225 24351895 ~ 24370680 (-) True LOC113530519
XM_034311957.1 mRNA upstream 67603 24374273 ~ 24386255 (-) True LOC113530517
TU308180 other downstream 541066 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1064883 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1855802 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2350624 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 2950532 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 195063 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 198958 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 481020 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 574288 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 677789 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU104255 True 970 lncRNA 0.37 3 CI01000015 6446285 ~ 6447859 (-)
eurasian perch (Perca fluviatilis) TU104255 True 830 lncRNA 0.42 2 NC_053118.1 33284913 ~ 33286592 (-)
striped catfish (Pangasianodon hypophthalmus) TU104255 True 2802 lncRNA 0.40 2 NC_047599.1 24070092 ~ 24073141 (+)