RNA id: TU308681


Basic Information

Item Value
RNA id TU308681
length 897
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G260677
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24616168 ~ 24617217 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacttcaggttAGTGatcagtttaattttaatttaattgaaatatgtttaataaacagtaataaacacctctaacagcacgtccccaagtgttttattcctcttattccacagcagcGTAACAACAAGAACAATGTTTTgcgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccatctgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtatccgtgtgaaggagtgtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtctgtgtgaaggagtgtgtgtgtccgtgtccgtgtgaaggagtgtgtgtccgtgtccgtgtgaaggagtgtgtgtgtccgtgtgaaggagtgtgtgtgtcccttGTAGAGAATGGAGTCCCATAATTCTGTGCGCAGGACAAGgagttccacacacacacacacacacacactttgtggcTGTAAGTCcgtctcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgcctCCTTCACGTCTGTGTGTCGATTCTCTTCTCCAGCTCCCACTGTGCAGCTACACGAGCGCCGTAGATCACAAACCCCCAGGACACCAACACCACCAGCCACAcgatctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308609 lncRNA upstream 12109 24528252 ~ 24604059 (+) True G260623
TU308608 lncRNA upstream 85348 24528252 ~ 24530820 (+) False G260623
XR_004579724.1 lncRNA upstream 87253 24523258 ~ 24528915 (+) True LOC117599259
TU308624 lncRNA upstream 136368 24477566 ~ 24479800 (+) True G260632
TU308545 lncRNA upstream 185477 24405044 ~ 24430691 (+) True G260592
XR_003403185.2 lncRNA downstream 88070 24705287 ~ 24706115 (+) True LOC113530849
TU308703 lncRNA downstream 108630 24725847 ~ 24728397 (+) True G260691
TU308704 lncRNA downstream 108630 24725847 ~ 24728397 (+) False G260691
XR_004579759.1 lncRNA downstream 118506 24735723 ~ 24736373 (+) True LOC117599308
TU308715 lncRNA downstream 128564 24745781 ~ 24751808 (+) False G260697
XM_034311609.1 mRNA upstream 3079 24599158 ~ 24613089 (+) True LOC117599218
XM_026920655.2 mRNA upstream 87253 24520879 ~ 24528915 (+) True LOC113530532
XM_026921357.2 mRNA upstream 162630 24448602 ~ 24453538 (+) True rnf146
XM_034311962.1 mRNA upstream 162630 24449950 ~ 24453538 (+) False rnf146
XM_026921041.2 mRNA upstream 300701 24312226 ~ 24315467 (+) True mdp1
XM_026920934.2 mRNA downstream 1403 24618620 ~ 24623805 (+) True LOC113530697
XM_034311590.1 mRNA downstream 7720 24624937 ~ 24636129 (+) True ddx58
XM_034312211.1 mRNA downstream 63403 24680620 ~ 24689895 (+) True LOC113530267
XM_026920325.2 mRNA downstream 75814 24693031 ~ 24698433 (+) False aimp1b
XM_034311635.1 mRNA downstream 75910 24693127 ~ 24698433 (+) True aimp1b
TU308384 other upstream 346901 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 583444 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1226854 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 1232515 23371747 ~ 23383653 (+) True LOC117599309
XR_004579660.1 other downstream 7720 24624937 ~ 24634545 (+) False ddx58

Expression Profile