RNA id: TU308717


Basic Information

Item Value
RNA id TU308717
length 5804
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G260697
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24745781 ~ 24751808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTTGCTCTAAATTAtaattcttctttatttttgtcgtaagggtgtacaaacttttgcaacTTGGCTCAACAGGTATATTTctatgatgtgttttattcgattttttttttacacattttctgaTCAACATTTGGtgtttaactgaaataaaaaaaaacatacagaatcaaaatgtgaacaaatacatgtaaaaagaaaacaactttgTACTTATATCATTATACTTTGTActatcattaataattaatatttaataattaaatgttgtaaagaaataaagatgcAGGCtgagtggtgatgagtgagAAACATAAAATCAGACGCTATCATGAAGAGACtcgggctgcgtcccaaaccacaaacaactgcactacacactacttaACAGCCTACACACCCTCTTCTGCATGACTCTATACCTTAACACTTGCCCACTATTTAATACAGCAGTATGCATTTGGGATGCAGCCTTAATCCTGTATAAACCCCATCACACTGTGGTTTACTGAGGTTCAGGACGCAGCCTCAATCCTACAgaatcacacacgcacactattTAGTATGCTAGTATGCTGTTTAGGATAGAGTCATACTCCTAAAAATGAACCTTCATAGCATACTAgttagtagtgtagtgtgtgttttgggatAAAGCCTTAGTAAAGACAACCTGCGCACTATTTAGTACAGTAGAGTGTAGACTGGAATTCCTATAAATCGTATAAATCATCGTAGTGTGCAGTTTGAGATGGAGGTATTAATCCGATAATCGAGTCAAGAACTACTTCTCTGTGGTGTATCGTCTCTTTACGTTCTCATAGCTAACGGGGTGATCATGTGACCTCGGTGTGACTTTTCTgatcacactcacacaacatAAACgctgatataaataaaactctGTCCTGCGTAGCGATATATACATCTATCTGTACATctgtttattcatatatttattcttCTCATCGCATCGACCAGCCGTACAGTACACGGAGCTTCACCTGGAATAAACACAAGGCAACTAGGAGTCTGCGGcgtctgatatgcaaattatatgcaaattagcagGAGTCGGCTGATGGAGAAAGGGTCGGACGCAGGCGATGTAGAACCGCTCTCAGTGTTCTGCTCTGCTACTGATACTTTCATGTAGAACATGTTCCTGGAAGGACATTTCTTTTAGCCAAACACTGCTGTCTGATGTCATCAGCGGGTGCCTCAGACTCCGCCCACTACTGAGCCATTTTGAATGACTGCAGAATTACTGAATTACCATCTCATAAGTCTGTTTATAATCACTCAGAGTTGAGGTAAGTGCTCAGTCAGGAAACTACACACAGACTTGTTAATATTCAGAGAGTTACGTGAGAGAATGACGTACACGGagcggagtttgtctaaaataGAGCCGCGTCTGAGGTACGAGTGATTCTGACCTCGAACTTAAACACATTCTTCTGCGATATCGACACGAGCGAGCAGTTTAAAGGTGGTCTAGACGCCGTTATCTCAgacacttctactcaagaaaaatctgaagccgcggaggtgtgaactacgcgcaggtgattttaataatctgaaagcGGAGCTCAGAAATTCCACTCAAGCAGccgcgtaacccgactctgaataccagcaactttcctggAACTTTcctaacttttggacttaagttgcGAATGTGAGTACAGCCCTGTGTCATGAGACTCGCACTCCGCACTGtactgcttgtttttgttttctccctgagctgccacctgattggtcagcgattaaaaaacaaaaaacgcaTGTGATATCACTCagcgtgtttttgttttttaaatgtaacttttttgcAGCTTCGTCAGCagcagcactttgtaaaagccGTCAGCTTGCTGGAGGAGCTTCATGTCATATGTGCTGgtgtttgaggaaaaaaactaAGATCGCTTGTTTAGCGTGTTTTACTTAAAGTAACGgatattgtacatttatttttatgaatatgtgCGTATACAATCTGCATAGTAAAGCAATGGAGAGATTcgtgtatatatttacattatagtttatgattaaatttatactaaattctttttttttatttattcttttttcatgtttcatgtcacAACAAAGTGATCGAGAGAAACTCCTCCTGATGTACCTGAATATTGCCTTACAtctaaagacagacagagagagagaataaaagagagataACAATCAGTCTaaacccattattattattactattattattattattattactattattaacgTTCTACACAGAGCTGGCGAGTGATTGGATGAGGTGagatcatgaatattaatgagccagTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgagccagTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgagccagTACACAGAGCTGGAGTGTGACTGGATGAGGTGaaatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGAgatcataaatattaatgagccAGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAATGTGACTGGATGAGGTGaaatcatgaatattaatgagccagTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGaaatcatgaatattaatgagccagTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgagccagTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgaatcaGTACACAGAGCTGGAGTGTGACTGGATGAGGTGagatcatgaatattaatgagccagTACACCGAGCTGGAGTGTGATTGGATGAGGTGagatcatgaatattaatgagccagTACATTGAGACAGTGTTGCGGTAAATGTGTATCTACactcagctccagaattatcaATGCAAGAATTGTGACACAaggttttattactttttttgattgataattgcaattttttttgtagaataaatttacatcatttaaaggttagatttctctcatGTATACTCAGTGcgagattaagctaattaaccacaaagacttttttttcataacctttCTTTTAAACTAATCTTTATCAAgcgtgccaataattttggagctgaCTGTAACCTTCAGAATCTAATCTCCAAAATCATCTAAACCTCAGGATCTAAACTGAATCTAAATCTGATCTTCCAAACATATCGTTATGTTTTAATAATCTGAAGGATAAATTTCTGCCTAATTTTTCGGTTCTATAACGTACCAAATCTGAGAAAGTTAAAATCTAATGTTCCTCAGTTTCATTTTCTGTCTAATTTTCCAATTTAAAAATTTACGTCTGATCTTCTATCCTTTGGTGTCTGAATTTTCTGATTCTAGAACAGGCCAAATCTTACAATTCTACAGTTTTGTGTCTAATCTTCttaatgtatacatttaaagtCTAATCTTTTAAGtttataatttgtaatttatctACATTTATAATCTTTTCATTAGTAATAACTTTTAAACGTATGAATCCGTGTCTGATCTTATAAATCTATACTTTCACGTGTATGATTTTGTGTCTAATCCAAACCAAAAGAAATGTAACATTTCCTTtctaatgaaataaacaatttcagaatttctagaataaataatagaaacaatttctagaataaataatatttctgaTCTGCTCCAGAGCCTGAGTATTATGGGATGGATTTCTCCTGACGAATCAGGACCTTTAGAAGACGCTGTGCAGATTTTATGGTGATGAGAATATTGTGATAATACCGTGATATGTATCGTGTAACTGATGATCAGCGTAAACTCTGCGCTACTGCATCTCATCTCATCACACAGCATTacgaaaatatatatatataatttacacaAACGTAAAGTACGCAAAGCTGAAATGATGCAGTGAGGCTCGTTTAAAAGGTAcgcaataaaatattaaacaccaTACAGTGAGCCACACAGAGGGGtgagaatgcacacacacacacacacacacacataaacagaaatgtttggtgtgaataaaacaataaaagatcCTGAAagcagccatcttggattttAGATTTGAGTAAATATTCTTCGTAACAGTTTTTCTGCGATACTGCGCTGATGAACCGCCTCCCACTTCCACCAGGTTAAGAGTCGCAGCTATTACGTCATCAtttgtgggcgtgtcctaatAACAATCATCACGATTAATTCAGCTATTTCCTTCAAtaataatattcaatattccaACATCTCGCCATACTGTTTCACATGTGTCTTATGCAAATCATTTGAACTGCTCTATGAGTTGTCATGGCGATGAAGAGAACCAATGGAAAAGCACGGAGCTGTTCTTGATCAGACGTCGGCATCAGCACAGCGTCAGTAACCGAAGCTTTATGATTGTCTAAACTGTGCTAGAACTTAAACTAAAAATAACTCATTTTaatcaccagaaaaaaaaaaactttaaagctgcagtatgtaaCTTTGGGGCGTTGAGTGATTTGGTGACATCTCTGGTGGAAATGTGTTACTGCAAGTGAAATCTTTTCATAACATCACGTGCTCCTCTCCTGTGGAgaatgtaaagtaaaaacaCGTTACGTTAATTTCCACGTACGAAAAACGTACGACGAATTCAGTCAATTTAGTCGCAGCCACATTTCCATAGTCGAAGGTTTAATTGCTAGCTGAGCTAGTTATCCGAGAGCGTGAAAACAtcgcatcttttcgaactgctgcaaGCAccaatgattggctagtgttactgtgattgacaggtgagtgaggaagccccgcccactcagaGAGCAGAACCGACTCATAAATGCTTCTCAATGCTAATTTTTAAGcataaaaaaggttttaaaaaattcatactgcagctttaactAGAACAAGGCCGAAGGCAGCCATGTTGGATTTTGCttgattttttcatttttgctcatgagaaaaaaaaatagaagataaaaagaaaattaaataaaatttatacacCATTCTCccttaattatataatatttctataaacaACTAAACCCCATTTCAAGTTTTGACCTGCTGAGGtacaagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctaacgTCTCCTCTCTGCTAATACACAGAAGAGGAAAAGCACTTTGGTGTGTTTTTCTAGACGAACGTTTTACTCGTCACTCGTTACAGTACTGTGATGATCAGGATGATGTCGCTCCCATcgtaaaggtcaaaggtcagggtGTGAAGTGCCCGTTGCTATGGCGAGTTGACCGGAGTACCTTTCAGGCTGTTCAGCGCTGCGTGGATGCGGAAATGCAGCCGAGACTCCATCGAGTAATCCTTATAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579759.1 lncRNA upstream 9408 24735723 ~ 24736373 (+) True LOC117599308
TU308703 lncRNA upstream 17384 24725847 ~ 24728397 (+) True G260691
TU308704 lncRNA upstream 17384 24725847 ~ 24728397 (+) False G260691
XR_003403185.2 lncRNA upstream 39666 24705287 ~ 24706115 (+) True LOC113530849
TU308685 lncRNA upstream 128564 24616168 ~ 24617217 (+) False G260677
TU308664 lncRNA downstream 17114 24768922 ~ 24771134 (+) True G260664
TU308726 lncRNA downstream 22707 24774515 ~ 24775224 (+) True G260705
TU308737 lncRNA downstream 54148 24805956 ~ 24806167 (+) True G260711
TU308739 lncRNA downstream 75515 24827323 ~ 24829045 (+) True G260713
TU308744 lncRNA downstream 77972 24829780 ~ 24830030 (+) True G260718
XM_026921435.2 mRNA upstream 20546 24715017 ~ 24725235 (+) True sgms2b
XM_034312246.1 mRNA upstream 20546 24715029 ~ 24725235 (+) False sgms2b
XM_026920324.2 mRNA upstream 47348 24693127 ~ 24698433 (+) False aimp1b
XM_034312221.1 mRNA downstream 45421 24797229 ~ 24801608 (+) True LOC117599303
XM_034312222.1 mRNA downstream 50084 24801892 ~ 24802529 (+) True LOC117599304
XM_034312223.1 mRNA downstream 51363 24803171 ~ 24804413 (+) True LOC117599305
XM_034311726.1 mRNA downstream 55709 24807517 ~ 24826683 (+) False zgc:158659
XM_034311724.1 mRNA downstream 58033 24809841 ~ 24826683 (+) False zgc:158659
XR_004579660.1 other upstream 111236 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 476514 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 713057 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1356467 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1362128 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile