RNA id: TU308751


Basic Information

Item Value
RNA id TU308751
length 1037
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G260725
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24838415 ~ 24839487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTCAGACTTGCTGCTGTATCGACAGAAGTTAAAGACCTCAGGTGGAGACCACTTCACTGGAAACTTGGCTCCTGAGGAACTGAGGTACTGATCGTCCAGAACGTATCTGGAAGTTCAGGTGATGGAAATCAGTGATTATGTGATATTTCTATAACAAAAACAGGCCTGGATTTGACAACACCGTTTCCTGTATGTAGTAAAATTAGCGCAACTGCCTCGTACTCAGGTTCTTTTACCAGCTGTACCTGTGGACAGGTGTAACTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTACATGTGGACAGGTGTAACTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTACATGTGGACAGGTGTAATTATAGAGTCAGGTGTAACTTTAGAGTCAGGTGTAATTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTAATTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTAATTTTAGAGTCAGGTGTAACTTTAGAGTCAGGTGTACCTGGCCATGCCGAAGTCTGACACTTTCACCACATGTGAGTCGCTGACGAGGCAGTTTCTAGCAGCCTGTGGAAGGACAGcgataattaaaacatttatattatataaatataatacgGAGTCTTGAGTGTGAGTTTCTTCTCCTGGTTTCACAGTTTCCATGTTTCTCTGTTCTCTGAAAAATACTGTACACTATGATGGATGTTATTTTGAGAAATCTTAAAATAAAGAGTGTTTGTAAATATATCGTGCCTCAGGAGGCGGAATATACGGTTAATTTGTAGACAGTAGGCGTGTAATCGTATTGTAGTGTACAACTTAAACAACGTCtttaatacaatacacacaatctGCCATTAATAATATCCTGAGAGAAGGTCCATTGTTTAACGGCTGTATTATTGTAGATATAAACGTATCTGTGAAGGTATACAGATATCGttaagattaaattaaatggagTAAAGATATA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308744 lncRNA upstream 8385 24829780 ~ 24830030 (+) True G260718
TU308739 lncRNA upstream 9370 24827323 ~ 24829045 (+) True G260713
TU308737 lncRNA upstream 32248 24805956 ~ 24806167 (+) True G260711
TU308726 lncRNA upstream 63191 24774515 ~ 24775224 (+) True G260705
TU308664 lncRNA upstream 67281 24768922 ~ 24771134 (+) True G260664
TU308764 lncRNA downstream 24675 24864162 ~ 25022554 (+) True G260736
TU308781 lncRNA downstream 70232 24909719 ~ 24910463 (+) True G260748
TU308784 lncRNA downstream 74767 24914254 ~ 24924554 (+) True G260751
TU308765 lncRNA downstream 79534 24919021 ~ 24934941 (+) False G260737
TU308767 lncRNA downstream 86297 24925784 ~ 24934941 (+) True G260737
XM_034311726.1 mRNA upstream 11732 24807517 ~ 24826683 (+) False zgc:158659
XM_034311724.1 mRNA upstream 11732 24809841 ~ 24826683 (+) False zgc:158659
XM_034311725.1 mRNA upstream 11732 24809841 ~ 24826683 (+) False zgc:158659
XM_034311727.1 mRNA upstream 11732 24810021 ~ 24826683 (+) True zgc:158659
XM_034312223.1 mRNA upstream 34002 24803171 ~ 24804413 (+) True LOC117599305
XM_034311620.1 mRNA downstream 17093 24856580 ~ 24868832 (+) True txk
XM_034312118.1 mRNA downstream 31182 24870669 ~ 24881640 (+) True zgc:56304
XM_034311594.1 mRNA downstream 160458 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA downstream 162523 25002010 ~ 25007817 (+) False LOC113525303
XM_034312226.1 mRNA downstream 171609 25011096 ~ 25013271 (+) True LOC117599307
XR_004579660.1 other upstream 203870 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 569148 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 805691 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1449101 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1454762 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile