RNA id: TU308764


Basic Information

Item Value
RNA id TU308764
length 597
lncRNA type read_through
GC content 0.52
exon number 2
gene id G260736
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24864162 ~ 25022554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacgcgcacacacgcacacacacacgcacacacacacctggagggGAACTGCAGCGTGGCGTAGTGGGAGTCGGTCCACGTGTGGTCCATGTGAAGGTTCTGGAAGCTCTGCAGAATCTCCATGGCTAAAGCATGACCCTCTGAGGACCCCGCAGGGTGGGCCGTCCTGCTCACTCGCCTGATCAcaaacatcaaacacatcaaaccGGTTCTAGAGCCGCTGgtcacacaccatctcacacctTTAAACAGTAACGATCTGTCATTAATAACATTTACTccagtgtgtgtctctgagtgtgtgtgtgtgtgtgtgtatgagggaaGGTGTCCACGTTGagcgtgtatatatatatatatatatatatatatatgcgtgtTCTAACTGGACTGTGTCCTCGATCTTCTCCTCCTGCAGGTATTTCTTCAGCATGTCTCTCAGTTCCCCCAGGTACATCCCCCCCGTCTTTGGAGAATGGTCCGGTCCGGCCGTGTCATCGACGAGCACCAGCTCCCCCTCGTCCACACAGAGAGGGCACATTCCATGAGACGACACGTACCCCAGCAGGAATGCTGT

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308751 lncRNA upstream 24675 24838415 ~ 24839487 (+) True G260725
TU308744 lncRNA upstream 34132 24829780 ~ 24830030 (+) True G260718
TU308739 lncRNA upstream 35117 24827323 ~ 24829045 (+) True G260713
TU308737 lncRNA upstream 57995 24805956 ~ 24806167 (+) True G260711
TU308726 lncRNA upstream 88938 24774515 ~ 24775224 (+) True G260705
TU308862 lncRNA downstream 24997 25047551 ~ 25053519 (+) True G260812
TU308864 lncRNA downstream 32594 25055148 ~ 25060232 (+) True G260813
XM_034311726.1 mRNA upstream 37479 24807517 ~ 24826683 (+) False zgc:158659
XM_034311724.1 mRNA upstream 37479 24809841 ~ 24826683 (+) False zgc:158659
XM_034311725.1 mRNA upstream 37479 24809841 ~ 24826683 (+) False zgc:158659
XM_034311727.1 mRNA upstream 37479 24810021 ~ 24826683 (+) True zgc:158659
XM_034312223.1 mRNA upstream 59749 24803171 ~ 24804413 (+) True LOC117599305
XM_026911882.2 mRNA downstream 20804 25043358 ~ 25046146 (+) True hmgb2b
XM_034312013.1 mRNA downstream 47361 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 229617 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 594895 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 831438 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1474848 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1480509 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile