RNA id: TU308784


Basic Information

Item Value
RNA id TU308784
length 1482
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G260751
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24914254 ~ 24924554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttagtgtgtcagtggttagtgtgtcagtggttagtatgtcagtggttagtgtgttagtgtgttagtgtgtcagtggttggTGTGTCAGTGGTTAATGTGTTAGTCGTTAgtagttagtgtgttagtgattagtgtgttagtggttagtgtgtcagtggttaatGTGTTAGTCGTTAgtagttagtgtgttagtggttagtgtgtcagtggttagtgtgtcagtggttggtgtgttagtggttagtgtcagtggttagtgtgtcaggGGTTAGTGTGTcaggggttagtgtgttagtgtgttagtgtgttaatgtttagTATGTCAGggtttagtgtgttagtgtgttagtgtgtcagtgtgtcagtgtttagtgtgtcagtggttttagtgtgtcagtggttagtaTGTCAggggttagtgtgtcagtggttagtgtgtcagtggttagtgtgtcagtgtgttagtgtgttaatgtttagTATGTCAGggtttagtgtgttagtgtgttagtgtgtcagtgtttagtgtgtcagtggttggtgtgttagtggttagtgtcaGTGGTTAGTATGTCAggggttagtgtgtcagtggttggtgtgttagtggttagtgtcaGTGGTTAGTATGTCAggggttagtgtgtcagtggttagtgtgtcagtggttagtgtgtcaggggttagtgtgttagtgtgttagtgtgttaatgtttagTATGTCAGggtttagtgtgttagtgtgttagtgtgttaatgtttagtgtgtcagtggttagtaTGTCAGgggttagtgtgtagtgtgtcagtggttagtgtgtcagtggttagtaTTCAATGATTCAATAAtattgaatacacacaccccgaatacacacacaccctgaatacagacacaccctgaatacacacacaccccaaatacacacaccccgaatacacacacaccctgaatacacacacaccctgaaaacacacaccctgaatacacacacaccctgaatacacacacaccctgaatacacacacacaccctgaatacacacaccctgaatacacaccctgaatacacacactcacctgtcaggttcttgttattgttgctgtttgctttatgtatatatatattttactgttcctgtttatgatgtgtgtaatgtttaagtatgtgtgtatatatatatgtgttttttttggtataaattttggtttaatctacttgcactatttgctttggcaacaatgtgatttataacattcatgccaataaagcactgatgaactgaactgacctgagagagagagagagagagagagggagagggaaagagaaaccTGCTGTTCAGGCAGCagtagatggagagagagagagagagagagatggagagagagacctgCTGTTCAGGCAGCAGTAGATGATGGggttgagagagagatggagagagagagagagagagagagagagagagagagatagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308781 lncRNA upstream 3791 24909719 ~ 24910463 (+) True G260748
TU308751 lncRNA upstream 74767 24838415 ~ 24839487 (+) True G260725
TU308744 lncRNA upstream 84224 24829780 ~ 24830030 (+) True G260718
TU308739 lncRNA upstream 85209 24827323 ~ 24829045 (+) True G260713
TU308737 lncRNA upstream 108087 24805956 ~ 24806167 (+) True G260711
TU308767 lncRNA downstream 1230 24925784 ~ 24934941 (+) True G260737
TU308800 lncRNA downstream 12367 24936921 ~ 24983803 (+) True G260759
TU308802 lncRNA downstream 12925 24937479 ~ 24938021 (+) True G260761
TU308820 lncRNA downstream 45845 24970399 ~ 25027793 (+) True G260779
TU308821 lncRNA downstream 45845 24970399 ~ 25028961 (+) False G260779
XM_034312118.1 mRNA upstream 32614 24870669 ~ 24881640 (+) True zgc:56304
XM_034311620.1 mRNA upstream 45422 24856580 ~ 24868832 (+) True txk
XM_034311724.1 mRNA upstream 87571 24809841 ~ 24826683 (+) False zgc:158659
XM_034311594.1 mRNA downstream 75391 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA downstream 77456 25002010 ~ 25007817 (+) False LOC113525303
XM_034312226.1 mRNA downstream 86542 25011096 ~ 25013271 (+) True LOC117599307
XM_026911882.2 mRNA downstream 118804 25043358 ~ 25046146 (+) True hmgb2b
XM_034312013.1 mRNA downstream 145361 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 279709 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 644987 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 881530 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1524940 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1530601 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile