RNA id: TU308821


Basic Information

Item Value
RNA id TU308821
length 387
lncRNA type read_through
GC content 0.45
exon number 4
gene id G260779
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24970399 ~ 25028961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagtgtgtgtgtgtgtgtctatgtgagagtgtgtatgtgtgtgtgtgtgtctatgtgagagtgtgtatgtgtgtgtgtctatgtgagagtgtgtatgtgtgtgtctatgtgagagtgtgtgtgtgtgtgtgtctgtgagagtgtgtgtgtgtgtgtctatgtgagagtgtgtatgtgtgtgtctatgtgagagtgtgtgtgtgtctatgtgagagtgtgtatgtgtgtctatgtgagagtgtgtgtatgtgtgtgtctatgtgagtgtgtgtatgtgtgtgtgtctatgtgagtgtgtgtatgtgtgtgcactgtaGTTGAAGTGGTTTGGGAAACTTGGTGAGGAACTCTCGGTCTCCTCGGCTAACTTTCCTCAAATGGGCTTtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308802 lncRNA upstream 32378 24937479 ~ 24938021 (+) True G260761
TU308765 lncRNA upstream 35458 24919021 ~ 24934941 (+) False G260737
TU308767 lncRNA upstream 35458 24925784 ~ 24934941 (+) True G260737
TU308784 lncRNA upstream 45845 24914254 ~ 24924554 (+) True G260751
TU308781 lncRNA upstream 59936 24909719 ~ 24910463 (+) True G260748
TU308862 lncRNA downstream 18590 25047551 ~ 25053519 (+) True G260812
TU308864 lncRNA downstream 26187 25055148 ~ 25060232 (+) True G260813
XM_034312118.1 mRNA upstream 88759 24870669 ~ 24881640 (+) True zgc:56304
XM_034311620.1 mRNA upstream 101567 24856580 ~ 24868832 (+) True txk
XM_034311724.1 mRNA upstream 143716 24809841 ~ 24826683 (+) False zgc:158659
XM_026911882.2 mRNA downstream 14397 25043358 ~ 25046146 (+) True hmgb2b
XM_034312013.1 mRNA downstream 40954 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 335854 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 701132 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 937675 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1581085 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1586746 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile