RNA id: TU308839


Basic Information

Item Value
RNA id TU308839
length 1650
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G260796
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25015220 ~ 25016939 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaagtaaaataatttattgGAGTTCGTCTCACCAGCCCTCTGTGTCATCATCCTCatgatcaataatcaataatcaataatcaataatatcaCAAACACAGAGCATGAACATCATCAGATACAGCACATGCCTTCTCTGAGGGAGCTACACAGAGCTACACAATGCTTCTGACATCAGAGCTACAGAGGAAGTGATGTCACACCGGCGGACTTTGATCTCCATTATCACTGGCAAAGACAGAGCCCGGTGATGTCACAGGCCAGGGGTGTGGCTCTGACATCACGGGGATGATTGATAGCAGATGCTGCTTTTTGATTGGACGACAGTATGACTGTCATAATTATGAGAGACACTGCTCTCGATAATTACTACTTCTATTAACAACATTATCACTCagtaataaaaaagaattacaACGTAATCATAACTGTCTATTAATCAGTAATTAACGAGAGAAActgccagacacacacacacacacacacacacacacacacatacacgcatacacacacacacatacacacacacacgcaagttTTTGTAGAATATGTTGTGATGGTTATGGGCTAACTCCAGGTTGTGATGGTATTAGAGTAAACTCTAGCTTTGGGAATCCCAGAAATGGGTTGTGAGGGTTCCATGTGTTCTAGAGTGAGTTGTGAATTTGTGAAATAGTCTGGAAAAGGTTCTCGAGTTTCTAGAACTGGCTGTCTGAGTGGTTCTGACATTTGTAGAACCGGTTTTGAAAGTGCCAGATGTGCAACAATGCCATGTGAATTTTTCACAACATGCTGTGACACTTTGTAGAAGAAACTGTGCGGATTCTAGAACAGGGTCGTGATGGTTCTAGAACAGTCTGAGAATAGTCTAGAAGGAGTTGTCGAGTTGTCCAGGTTCTAGAATGTGTTGTAAATGACCTCACGGGGTTGTGAATATTCATGGGACGTAGTAAATGTTCTAGAATGGGATGTCAATGGTTCTGACAGGATGTGAAGGTTCTAGAATGGTATCTGAATGCCCTAAAATAAATGgagcatttataaatgtaaatgtttataaatgttttgggAGCACTGAAGGTTCTAGAAAGAAAGGTTCTGATTGTGCAACTTCCAGAAGGAGTTATGCAGAATGTTCTAGAATGGTTTGTGGATGGTGTTGAGAGATTGTGAAGCTTTTAGAGTGGAATGTAAATGTTCTACAGAGGTTACAGCAGGGCTCTAAAGGGTCCAAACGGCTCCTGAAGGTTTTTGTGAAGGAATTTTTTTAGAAGGGATTTTGCAGGTTCTAGAAAAGGCTTGGAACAGTTTTGAGTTCTGAATGGTTGGGCAGGGTAGTTAAGGTTCTAGAACGGGTTGTCGATGTTCCAGACGTCACCGCTCAGCGCGTTGGCCGCTCCCTGCAGTGTCCAGGTGAACAGCGCGAGCTGGCGGCGGAAGCGAGCCTCGTGGAACAGGTGAGGATGAGAACGCAGCCGGGAGAGATGCTCAGTGAGCGCACTCAGAGTGTGTTCACCACGACCATGCAGCACGTGGCGGAATGGAGTCTCCACCACTGACACGTACTGAGACAGGAAGTAGTactccacctacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308800 lncRNA upstream 31417 24936921 ~ 24983803 (+) True G260759
TU308802 lncRNA upstream 77199 24937479 ~ 24938021 (+) True G260761
TU308765 lncRNA upstream 80279 24919021 ~ 24934941 (+) False G260737
TU308767 lncRNA upstream 80279 24925784 ~ 24934941 (+) True G260737
TU308784 lncRNA upstream 90666 24914254 ~ 24924554 (+) True G260751
TU308862 lncRNA downstream 30612 25047551 ~ 25053519 (+) True G260812
TU308864 lncRNA downstream 38209 25055148 ~ 25060232 (+) True G260813
XM_034312226.1 mRNA upstream 1949 25011096 ~ 25013271 (+) True LOC117599307
XM_034311594.1 mRNA upstream 7403 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA upstream 7403 25002010 ~ 25007817 (+) False LOC113525303
XM_034312118.1 mRNA upstream 133580 24870669 ~ 24881640 (+) True zgc:56304
XM_034311620.1 mRNA upstream 146388 24856580 ~ 24868832 (+) True txk
XM_026911882.2 mRNA downstream 26419 25043358 ~ 25046146 (+) True hmgb2b
XM_034312013.1 mRNA downstream 52976 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 380675 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 745953 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 982496 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1625906 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1631567 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile