RNA id: TU308862


Basic Information

Item Value
RNA id TU308862
length 1076
lncRNA type inter_gene
GC content 0.48
exon number 7
gene id G260812
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25047551 ~ 25053519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgactcttagaaaacacattttatttacaaagtcTGTACTCAATTtggatgaaaaacagaaataacggaacaaatgtataaaaaaaaaaaaaagaacttcaaCATGGGGTCtgagtgggatttaaaaaaataacacctCAGTGTGATCTAACATTAAaactcatctcacacacacacgtctctctgacacacacacacacacacacacacacacacacactttgatacacgcacacacaaaacacgAAACTcaatcatcatcctcatcatcatcttcatcctcagGGTCTCgtttcctcttttctcctttACACTCGTCCTCATcttcctcctcatcttcatcatcgtcatcctcatcatcctcctgaCCCGAGTCTTCCTCcTCATCTCCACTCgcctcttcatcctcatcctcctcatcatcatcattttcctcgtcctcatcttcctctccatcttcatcctcatcctcgtCACCTCCCTCTGCGTCCGAGTCGCTCACCTCTCGGTCCTCGGGGTCGTAACCGTCCAGGTAGGTGATTTGGGGGAGGAGCTTAAACACACTCGCCCTGTAATCATCCAGGGTCGTGACCTCACAGTTAAACAGGTCCAGACTCTTTAGACGGGGCAGATCcctCAGTGGCTCCAGCATGCTCAGGTCTTTCAGTTTGTTGCCGCTCAGGTTGAGGTGTGTGAGGTTGGGCAGCTTCTCCGCCAGAATCTCCAGACCAGCCGAGATCCGGTTATCACTCAgctccaaCTTCTTGAGTTTGGGCAGTTTGGGGAGGTTGGAGATCGACGTCAGACCCACGTTAATCAGACTGAGGAACTCCAGATTCACAAACTCGGATGTCAGACCCTCGATCTTCCCTTCATCAGACCGACAGTTATCCAGCACCaactcacacacGTCTGACGGCGTCCTGTTCCGCAGCTCCAGGTGAATCCTCTTCTTCATGTCCATGTTGTGAGGAATAAATGAGGAATAAAGCGAGTTTAGTGTGAGATGAGAGTGAAGCAGCAGAGAAACGCACACAATCACACGAGTTTAACATGAAGCTCAGcctcttcttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308821 lncRNA upstream 18590 24970399 ~ 25028961 (+) False G260779
TU308820 lncRNA upstream 19758 24970399 ~ 25027793 (+) True G260779
TU308764 lncRNA upstream 24997 24864162 ~ 25022554 (+) True G260736
TU308838 lncRNA upstream 30612 25015220 ~ 25016939 (+) True G260796
TU308839 lncRNA upstream 30612 25015220 ~ 25016939 (+) False G260796
TU308864 lncRNA downstream 1629 25055148 ~ 25060232 (+) True G260813
XM_026911882.2 mRNA upstream 1405 25043358 ~ 25046146 (+) True hmgb2b
XM_034312226.1 mRNA upstream 34280 25011096 ~ 25013271 (+) True LOC117599307
XM_034311594.1 mRNA upstream 39734 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA upstream 39734 25002010 ~ 25007817 (+) False LOC113525303
XM_034312118.1 mRNA upstream 165911 24870669 ~ 24881640 (+) True zgc:56304
XM_034312013.1 mRNA downstream 16396 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 413006 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 778284 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 1014827 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1658237 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1663898 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile