RNA id: TU308864


Basic Information

Item Value
RNA id TU308864
length 3747
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G260813
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25055148 ~ 25060232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGACAGCAGGCTTGTGTACATGTAgctttgtggttttgtgtgttttcagtctgtaaattaaacacaaaactgATGCAACACAATGAGGCGTCACaacaatttacacagaaaataatgaaaataaaacacgtATGAAATCTAATGACGTCGTAAAATCCTGAAACTGAGTCCAAAtctgaagagaaagaaatacatgAGACTGAATCTATAGGCTTTTCAGTGGAAGCTTCCAGAAACAgataacacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgactcaggaCTCATTACTCATCATTAGTgacactgcattttattttacgtGTGTGTGACATTTGTGTGATCACATCAAGCGATACGACTTTTACAGCTTCTGTTGATCCAGCACAGGAGAgagaggtatacacacacacacacacacacacacacacacacacatatatatagatttatatatatacacatagagAAAAACAACAGGTCCATACAGGAGATAAATATACTCACACTGAAGTTTAAATAATTCACCTTCAGATTCAGTTCaacacaaaaaacatgccacggtacacacacacacacacacacacacacacacacacgcacgcacacacacacacacacacacacactcacacacagtgtgaagGAGGTGGTGTAGTGATGGAGGGCTCAGGAGTGTGAACGTCTCACACTGAGTTATTGCTGTAATGATTATTGGACACAGATTGCTGGATATCAATTattcatgaattattcattaattactgataaattattaattaattattgattaGTATCAGAGTGCTGGAGAGACTCAGCAGCAGAGTTAGCGaggataaatggataaactttatcacaatatttattcAGCATAATGGACAATAACATTCTTTatgtaaatacacaataaaGTGGGCGGAGTTTCATTTTGTGGGCGTGACCCATTGGTTATTTTTAATGCTAATTCTGAACATGTTAATAGCTAATCTAATCACTCTTCTTAAAACAGCGAGTGAGAgacaaatgattttattaacaATTCGACTAGattttaaatggagaaaaaagaaacactagCTAACATTGCTTAGCTACAAGCTAAAGACCGTCCCATCACTGAGCCACGCCCACTGAGCCACGCCCACCAAGCCACGCCCACCAAGCCACGCCCACCAAGCCACACCCATGTGCAGGTGAGAATAATCCTGTGCATTTTTCGTGTAAATACATGTGACACGTGTATCTTTGctcagataaaataaaaacatctaaaataaaaacaatcccGAGTTGTCGCAAACCACACTCACATAAACTGTAGATACtaacatgctaatgctaatgctaatgacaaacaaaatggagaaaacttTCACACTTCAGTCAGAGACACGACTATCAGCTGTGACGCGAAAACAACaggagaaataaacacacactcatacacacacactcatatacacacacactcacacactcatatacactcatatacacacacactcactcacacactcatatacacatacacacactcatacacacacacactcacatacacgctcatacacacacacacaaaaatgagagggaaaataaggaaaaaacatCCGGTTTCATTTAATACTCACATTTTAAGGcggaaaaaacaaataatcgtcacttttacactttaaacACGTCATTAAAAATCCATAAAGTTCATTTTACACGACTGCAGATACGGAAACACCAAATCcaccaatcagagagagagatcagctTCCTCTGTGTAACACTGTAcaggataaacacacacacacacacacacactcatagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacaatacgcacacacacacacacacacacacacacacacgcacacagttgTGCATACATTGGAATGTCACTTCCACATGAACTGAAACTACAgaacagttaaataaatataatgcacaaacaaataaacaaataaataaataaataaataaataaataaaaaagctgcaGCTCAGGCAGAAACACTTGCAGAGTAAATCGCAGGAACTCTTCTCATCAGTGATTATTATTCCGACTTTATGAGAAAGTTTTTTAAATTGTGCTGGAAAAAAGATCGAATAAACAaccaaactaacaaacaaaaagttcaggagaaatgaaagagaataaACAGGGCGTGTCCTAAATGCCTTCACACACTGCGTCTCTTGCAGTTTCGATTTAAGGGTTCTGATTGGATGTGAGGGGAACCAATCAGAGTGAAGCTCCGCCCTCCAACAGAAAGCCTGTATAATATCTACAGGGACTTCACACAGAGACGATGTTCAGCCGTGTTCCACCAACAACACGACGTAGTTACGGAGTAAACGGACGATGTGTCGAGATTTGAATAAAGCCTGTGATTATGAAACTGTAACAGCGCCACCTGCAGGACTGGAGCCCTCGGGCGTGACGACCCGGAGCTGCAGAGGTTATGGACGAGCTCGTGAGCTCACGGTTTCATCGTCACACGTTTCTCCCAGACGCCTTCTCCGCATTCAGCCTCACGAAAAGCGTAACACGGTGCGACAACAACAACTCAGAGTTTTATAGCTTTACACTTTGATCTTTAACGCTTAACAGTTTAAAACCAGCGTTTAAATCCACAGCCGTCTTTACACACTCAGGATTACGGAAGTCCAGAAAGATGATGTGGAGATGCGTACGATTAATAAAGCGATCATATCGCTGTGTGTCACGCAAACATCCGAGTCTCAGCAAAGGAACCCTGTAGAACCTCGCGCAGACGATTCGTGTCATTTTTATTCCTGACGCCATCCTGAGAAACGAAACGAACTGATCTTCAGAAATGATCTCAAACTCTTATGTTAGCCACGCCCACTGAACGAAACCGCAGCGTAAATTACAAAGAAAACTGAAGAAAGTTGGAACCTGAGTGTTACAGCAGAAACGTGACGTGAATATAACGAGAcacttattaatattcatatcatatttcATCTACATTAATAGTGTggaatattgtgatataattagTGATAACTGGAACATTCATAAACAAATgatcagaaaacaaaacaaataaaccagCAACAGATAAACGAATAAACAAGCAACGGTGgaagaaaagcacacacacacacacacacacacacacacacctgagccgCCTCTAAACGCAACACTGCACGGGCACACAAACACTtcagagtgtgttattaattatttactggaacgtcttcatcatcatcatcatcatcagaaatGGTGGTGAAGTGGGTGGAGCATAgcaaggggcggggcttaatgAGGCAGAGGGACCAGGATGTCGACGTAGTTGATGGGGAAGAAACCCGACTGGCCGTGGATCATCCCCTCATACCAGTTATCAtcgatctgattggtcagcgtGATGATGTCACCTTCCTTAAAGCCCAGCTCGCCCTCATTCTCCGGCTCGAAGTCATACAGAGCGCGACAACACGGCTGATCCAGAGGagctggggAGCGAGCAGGTGATTTAGCAGTGTGTATTCCTCCATTGTGAGTTTCACTGGGCAGCTGAAGCTCCATGCGCGGTTTAGGAATGTATTCTTTCCTCGGCTTACTGGAGGCCTCCTTTATcctgtgttttacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308862 lncRNA upstream 1629 25047551 ~ 25053519 (+) True G260812
TU308821 lncRNA upstream 26187 24970399 ~ 25028961 (+) False G260779
TU308820 lncRNA upstream 27355 24970399 ~ 25027793 (+) True G260779
TU308838 lncRNA upstream 38209 25015220 ~ 25016939 (+) True G260796
TU308839 lncRNA upstream 38209 25015220 ~ 25016939 (+) False G260796
XM_026911882.2 mRNA upstream 9002 25043358 ~ 25046146 (+) True hmgb2b
XM_034312226.1 mRNA upstream 41877 25011096 ~ 25013271 (+) True LOC117599307
XM_034311594.1 mRNA upstream 47331 24999945 ~ 25007817 (+) True LOC113525303
XM_026911786.2 mRNA upstream 47331 25002010 ~ 25007817 (+) False LOC113525303
XM_034312118.1 mRNA upstream 173508 24870669 ~ 24881640 (+) True zgc:56304
XM_034312013.1 mRNA downstream 9683 25069915 ~ 25072941 (+) True LOC117599273
XR_004579660.1 other upstream 420603 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 785881 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 1022424 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1665834 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1671495 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile