RNA id: XM_034311957.1


Basic Information

Item Value
RNA id XM_034311957.1
length 4642
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC113530517
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24374273 ~ 24386255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATAACAATTTACCAAATTAACTACCTAGTTATTGAGTCAGCTAACCGCTAACCTCACTCTCCCTCCTGAGGTAACGGCACCGACTGAACACTGTAGGACTCGGAATCGATCTCACAGAGAGTCGATTCTCCGGCACGAGTCATGTGGGAATCGACTCTAAAGCTTTGGAGTCGGTTCGATTCCTCTCACAGAAGACGTGAAGTGAGAAAGTAGGAAATTCCGCTGTCACATAGTGTTTTAGAGTGTCTGAAAGAAGTCTGAAAGAAgataaatgtacaaatttaCACCAAGACTGCAGGAAAATTAATTTATCtgttttcatcttcagctgatGGACCGCACAAAAAGCGCTTATAGGAGATTAGATGAAGTCAAAATGGATGCAAGTGCTCTACATGTTTGAATTGTTTGTTTGGGGTTTTCTCTGTGCAAGTACAGTGATGTCACCAGCAGAGGTCgccaaaaataaatttaaaaattgctgaCTAAGCGCTCTGTGCACTAGCTgtacatatattacacatactGCATTTGATGTTTATACTGTGGTATATAAGTTTATACACTTAACTGGTTACATATGCTACTGTGAACAAATATTTACTACAGTTACCTTCTATGTCACAAGATCCCAACCCTGATCATGGAGAAACCCCTGATGTTaacattttagtgtttcccttctctaacacacccacttcaattcaggaagggctgttaattagctgattagttgaatcagtgttagagcaggaaaaacactaaaatgtaaatcacaGTGGTTTCTGCAGGATCAGGTTTGGGAACCTGTGTTCTGTCACTACTCTAACTGCTGTAATCAGAATTCTTATACCAGACTGCACACTTCAGTATAGTtctactgtttattattttccattatgcACATTATGCACCTCTACTTGTTTTCATTTAACTGACTGCCTTTTATCCTTTTTGTCCTGTGTACAAAGTGCTCAGGTAAACAACCTAAGTTATCAAATGACCACGCCCTCCAGGTGTTCACGTTCCGCATTCTCACACCGACAGGTTTTCCTGGTTTCAGATGGCGGAACTAGACCGagtttgttgttctttttcagtttaatcCCGAGATTAAGGAGCGAGTTTGCTTGGGTTTTTTCGGTTTAATCCCGAGATTAAGGAGCGGTTTTGGTGGATAATAATGCGCTAAGGAAGGAGTCGTTAAACAGggttgcctattattattgttattctaaATTGTAGGGAAAAGCTTGACATCCAAAATGACTTCTTCCACACAGCTGGACTCAGAGAATTTTGAAAGaaagagatcagactcaccagaccccagctgtgtgtccatgaagagtgatcAGTCACTGGATGCACCAATAAAATTCAGAGAGGGACAGAGTTCTACTGAGCTCAGaaagagaccagagtcaccagaacccagctgtgtgtccctGAAGAGTGATCAGTCACTGGATGAACTGAATTTCAGAAAGGGACAGAGTTCTACTGAGCTCAGTGACCAAAACAGTAGAGACAGAAACAAGCAAAAGTTAAAGTCTATATTCaagGAGCTGGAGCGAAAGTTCATCACTGTAATGCAGAAAGAGTtagaaaaattcatgaagttacttagtccagattacccagaaTGCTCTGACAGTGAGAAGGATCAGAGTGATGTGAGAGATGGagtgctgaagatcacactgcacatcctgaagaacatgaaccagtCTGAACTTGCTAACACACTACAGAACAAATTTCTCCCTGCTTGTCATCAAAAATTCAAATCCAGATTAAGtaaaaaatttcagaaaatCCAGGAGGGAATCTCAGACCACGGAACTGCaacacttctgaatgagatctacacagagctctacatcacagagggagGAAGTGGAGACGTTAATactgaacatgaggtgagacagattgagacagcgttcaggagaccagcaacacaggagacacccatcaaatgtaatgacctctttaatgaaaaagacaccagaactgtgctgactaaaggagtagctggaattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggacgtcttcttcatgtttccacttccctttagagagctgaatctGATGAAGGAGAAAAAGTTCAGTCTGATggatcttcttcatcactttttcccggAAACAAAGGAATTAAAAATGAGACATTATAATCAGTACAGGATGTTGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgaggcttcagtgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagagcctggccaataaaatcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatctcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagataaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccagcagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggaatgtgtacccaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagcgttcaggagtttctgtctgctttatattcatttctttccttcatcTTAAACAACAGAAATGTGCTTCAGGAGCAAACTactggatttgtttttttcaagaAGTCAAAAATGTCTGATTTCCTGAAGattgcagtggacaaggccttacagagtgagaatggacacctggatcTTTTCCTCCgtttccttctgggtctctcactggagtctaATCCGATTCTCTTACGAGGcttaatgccacagacaggaagcagctctcacagcaaacaggaaacagtcaagtacatcaaggagaagatcggGGAGAACCTccctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtccAAATTTACCTGAATAAAGGAGCATATAGATGTCTCCATGGTGCCAGACTCTCTCCttctcagtggtcagctctggcgtttgtgttactgaactcagaagaggagctggatgagtttgatttgagtaaatatgacaaatcagaggaatgtcttcataggctgctgccagtgatcaaagcctccagaaaagctgtGCTGCGTGgttgtaatctgacagaggaaagctgtagagttctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgacaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacagtggagatactgaggctgtgtgGTTGTtatctcacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtaacaataaactgcaggattcaggagtgaagctgctctctgctggactgaagaatccacactgtaaactggagatactgaggctgcgtGGTTGTAATCTGACaaaggaaagctgtagagttctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgacaacaatctgcaggattcaggagtgaagctgctctctgctggactgaagaatccacactgtacagtggagatactgaggcTGTGTAAatgcagtattacagatgaaggttgtgctgctctggtttcagctctgaggtcaaacccctcatcacacctgagagaactgaatctgaacagTAATAAAccaggagactcaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagacactacggctgcgtgagtgtaatctgacagaggaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagttacaataaactgcaggattcaggagtgaagcttctctctgctggactggagaatccacactgtacactggagatagtgaggctgcgtTGGTGTAAATTGACAGAGGAAAGCtatagagttctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgagaataaactgcaggattcaggcgTGAAGCTGCTCTCTAATGGACtgaagaatccacactgtaaactggagatactgagGCTGGAATAttgcagtattacagatgaaggctgtgctgctctggtttcagctctgaggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308500 lncRNA downstream 57858 24302005 ~ 24316415 (-) False reps2
TU308533 lncRNA downstream 67603 24305229 ~ 24306670 (-) True G260581
TU308490 lncRNA downstream 148315 24213334 ~ 24225958 (-) True G260548
XR_004579699.1 lncRNA downstream 234167 24136489 ~ 24140106 (-) True LOC117599232
TU308266 lncRNA downstream 398690 23974201 ~ 23975583 (-) False LOC113530810
TU308907 lncRNA upstream 1251 24387506 ~ 24409038 (-) False G260823
TU308927 lncRNA upstream 62303 24448558 ~ 24453499 (-) True G260833
TU308924 lncRNA upstream 63881 24450136 ~ 24453499 (-) False G260833
TU308936 lncRNA upstream 114874 24501129 ~ 24503863 (-) False tent5ab
XR_004579670.1 lncRNA upstream 212856 24599111 ~ 24600250 (-) True LOC117599219
XM_034311958.1 mRNA downstream 3593 24351895 ~ 24370680 (-) True LOC113530519
XM_034311584.1 mRNA downstream 34110 24323615 ~ 24340163 (-) False LOC113530540
XM_034311583.1 mRNA downstream 34113 24321672 ~ 24340160 (-) False LOC113530540
XM_034311582.1 mRNA downstream 34113 24321672 ~ 24340160 (-) True LOC113530540
XM_034311810.1 mRNA downstream 78528 24273737 ~ 24295745 (-) False reps2
XM_034311956.1 mRNA upstream 1557 24387812 ~ 24447327 (-) True LOC117599267
XM_034311961.1 mRNA upstream 9874 24396129 ~ 24402716 (-) True LOC117599268
XM_034311960.1 mRNA upstream 36770 24423025 ~ 24429005 (-) True LOC113530518
XM_026920905.2 mRNA upstream 74272 24460527 ~ 24468085 (-) False LOC113530680
XM_026920904.2 mRNA upstream 74272 24460527 ~ 24467393 (-) True LOC113530680
TU308180 other downstream 610110 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1133927 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1924846 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2419668 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 3019576 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 115478 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 119373 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 401435 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 494703 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 598204 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile