RNA id: TU309081


Basic Information

Item Value
RNA id TU309081
length 2798
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G260926
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25043448 ~ 25046293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caatatttcacacacacacacacacacacacacacacacactggagcgTAGATAAGAGTGTGAGTTTATTATAAAACTGTACTCTACACATGGCTGAAACACAAACCcgtacaaaaataaacacatcacaatCTCTGTGACTTATTGCTTAGGCTGGTCtcacgctaacacacacacacacacacacacacacgcacgcacacacactctgacacacacacatattctctgacacacgcacacacgttaAAACCCCCAAACCGCAGTGAAGTGATCCTGCATAGATGCAGCAgccgtgacacacacacacacacactctactcgtcatcctcatcttcctcctcgtcgtcttcttcctcatcttcatcttcatcctcctcatcatcatcatcatctgcatcAACCATAGCTTTCTTAGCGGAGCCTGTGGGTCGGCCAGGGCCTCGTTTAGGAGCTCCGCCCCCTGCCCCGCCCTTAGCGCGGTACGCAGCGATGTCctacaggaaacaggaagtagagacACGTCAACACGCTGccctgtgtgtgttgtgtgtgtgtgtgataaagactataatgtttataattaaaGTACTTTTCACTGTTTGAGGAGCTGAAGGTCAGAGCAGGAAAGTCATGATATTTACAGATATCTTAACGATACGCAACACGCATCGCATCATCACAGCTGATGAAGTTTTAACGCTTTAACGAGGCCAGAGCAGATAACGGCTGAGTTTTTTCTGGGGTAGTTGGTTTGTTataaacatgctgtttttatACCACTGGGATATCACCATTCTACACCAAGGTCTAAAATAAACCCAAAATATCTGCTCTGGTCTTGTTCAGGGGTTCAGTTTCTAAAATTTGTCATGATGTCATGATTTGTACGATGCTAAAGGTTAATTAATTTGATGTTACTCGCTCGCTGACGATCAGAAACACGTGAGGCGAGTGCGCGAGATGAACATTCACCTTCTCGTATTTCTGGCGCAGAGCGGCTGCTTTCTGCTCGTAGGGCGTGCGGTCTTTAGGGCTCTGTTTGGCCCACATCTCAGCCAGCTTCTTGGCGATGTCTCCGATGGACAGGCTGGGGTACTCGCCCTTCACCGTCGGCCTGTGCTCCGAGCAGAAGACGAAGAACGCTGACCTGGAAAAAGAGGACGAGACAGAGACGGGGTTCAGCTGTAGCGTGTCTAATAGTGAGAAACCTTCTTGGGGGGTTTAAATCAGGTCCGTAAGTAAGTACGCAAATTAAAGGACTTGTAGTCTGAGCTCTGTACTTCAcactgatatgcaaattagctcacGAATAAACATCCAAGACACACTATTCTGATCTGAACCAGGATGGGCACAgggaatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggtgatGGGATCACACGTACGGGGGGCGTTTGGGAGCGTTGGGgtccttcttcttcctctccttcttccCCATGCCTTTCGGAGGGATGTAGTTCTTCATCTCCCGATCGTAGCGGTCCTTATCGGCCTTCGCCAGGTCTTCAAACTTCTTCTTCTCAGTCGCAGCCAGagtctaaacacaaacacacacacagccatgttaCACCCAATTAACCACCTACTAACCACCACCCACTGCCGtgttccatacacacacacaccttccaccGCTCAGAGCAGGTCTTGGAGAACTTGGTGAAGTTCACCGTGGTACCAGGACTCTTCTTCTTGTGCTCTTCCCGACAGGAGAGAACGAAGAAGGCGTACGCTGAGGTCCGGCCTTTCGGCTTATTCACATCTTTCACCATGGctgcaacaaaaacaacacaaaaatattattaatttacactttatatatatatacacatgtatgcAGGGGACAAAACTAATTCCTGTAAAGTGTACTCTATAAAGTGTAGATGATATTATTCCTCAATCTCAGTAGTGCACTTGGTTTTACTGTgtggatttatttacagttaactTTAGATTTAAACTCgcgccattttttttttacctcagaaTTTTTactattatgtttttattaattgtataaCTATATATGTTTGTTTTACACCAAATAACGTCCACAAAGACGATTATTTTCTCGAACTGCTTAAATCTGAATTGTATTCGATGAGAAATCAGGTTCACTTCAGGAAAGCGGCCCGCTGTGGGGATCAGCGTCCGCTGCTTATGCTAAGCTAACCAGAACAATGGTGCCTCCATTTTCTTTCCCGCTTAATCCTACGCCATCGCGTCTTTCCCACTAGTCCAGACAAATCCCGCCTTCCTGCGCCATGATTGGCCAACTTATTACGAGCACGCaccactagccaatcacagcgcgGAAGGCGGGATCGTACCGACCAATCAGAGGACGGTAAACCAGATTTGTCGGGAAATGGCTGAGGAAAAATAACGCACTCCATTCTTTTCACTCTCCCTGTCCTTATCTGCGAGTTATCTCAAAACCTTAacgtgctttttaaaaaaaattatttcatataaaaaaaattaaacctaaATTCCTACTGTTATTGAGTGTgtacatttaatgtatttaacaaCTTTATAAACTTAAAAACTAAAAGCTAACGTTACACagctatttttttaacaaaagcgACAATAGTGACGATCTCTTTAAACACGgatattacacacacaattaaaccAAATCGTTATACCAAAATATATCAATTcctaaatgctttaaataaataaacagtaataacagtgttattaacagtgttattattacacacacacacatacctgctGCAGTCTCACTCCGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309132 lncRNA downstream 853 25042151 ~ 25042595 (-) False G260972
TU309120 lncRNA downstream 68141 24974715 ~ 24975307 (-) True G260962
TU309082 lncRNA downstream 78553 24961056 ~ 24964895 (-) False nfxl1
TU309098 lncRNA downstream 169701 24870714 ~ 24873747 (-) True G260942
TU309075 lncRNA downstream 178558 24844027 ~ 24864890 (-) True G260921
TU309137 lncRNA upstream 26418 25072711 ~ 25073088 (-) True G260976
TU309140 lncRNA upstream 42346 25088639 ~ 25089918 (-) True G260979
XM_034312227.1 mRNA downstream 1980 25028795 ~ 25041468 (-) True ctc1
XM_034312192.1 mRNA downstream 17358 25015212 ~ 25026090 (-) True tfr2
XM_034311595.1 mRNA downstream 35255 24983979 ~ 25008193 (-) False si:ch211-149b19.4
XM_034312022.1 mRNA upstream 1327 25047620 ~ 25053567 (-) True LOC117599278
XM_034311547.1 mRNA upstream 10625 25056918 ~ 25067948 (-) True sh3gl2b
XM_034311681.1 mRNA upstream 30480 25076773 ~ 25079035 (-) True LOC117599229
XM_034311593.1 mRNA upstream 59415 25105708 ~ 25111538 (-) True LOC113525390
TU309131 other downstream 853 25040791 ~ 25042595 (-) True G260972
TU309124 other downstream 43600 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309088 other downstream 52917 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309105 other downstream 160303 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 248551 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309138 other upstream 30527 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile