RNA id: TU309082


Basic Information

Item Value
RNA id TU309082
length 1307
lncRNA type sense_over
GC content 0.48
exon number 4
gene id nfxl1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24961021 ~ 24977067 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgctgtgtgtgagcatgtgtgtgtgtgtgtgtgcgtgtgtgtgaggagaacTGCAACCAGAAAGTCAAAGTCAAGTGTCCATGCAAGAGGATCAaaaaggagtttTCATGTTCCTACGCCAGGCAGGAGGAGAATCTGGTGGTGTGTGACGACACCTGTAAGGACCTACAGAGGAAATATGCTGaggccCGAGAAGCAGAGGAGAGAGCAATCAGAGAGGAAGAGCTGAAGAAGCAGCAggCCGAGCTGGAAGCCTTTGAGAAACGGCagaaaggaaagaggaagaagaacagGCGCAACACAGAGGTGGAGACCCAGGAAGGGGCGTGGCTTAAATACAGGAAGTACCTCCTGGTGCCTGTCTGTGGCGTCCTATTGGCTGTCGGAGCATTTTATCTGCTGCAGGCCAGTTAGAGCTGTGGACCAGTGACCATcaccatgctcacacacacacacacacacacacacacacaccccttcacagtttagtgtttcctgctttaacacacacatcaccaggataacaaactctgtgtgtgtgtgtgtgtgtgttttatacatgCAATCAGTGATTACGCTATAAGCCCCTCCCTCCAATGTTCCCTTaaaagccacgcccccaaacCACATGCACATGAGCGCTAGTGCAAGGCCATGGACTGAAAGATGTGTAGATCCGCCTCCTCgtcctgattggctggatgtTTGGTGGTCCACGTGGAACGTTCAAGAACGTGAGGAGAAACTTCATCAGAGATCAGATACGTTtttcagtgatgtcacacacaAGCTGAGACGTGGCGGGACATCACGTATTCTCGTACGTTTTAGCTACAGAACGGCTGCTAGCTACGGGAATTATGGGATGGCGTAAAGCGAGAAGCTGCGGAAAAAGCTGCGGAATCACGACTCCTGGCGAAGTGTGTGAAGAATCTCCTCAGCCTTTCAGCGCTATCACAGGACAAACTCATCTCATCAACAATGCCTtacagccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcagtctcattaaatttaatttggaTACTTCTAAGCCAGACGTCTCTGTTAGTTAGATTACGTTTATCTCTATAATGATAAATTCACTGAGTTGTGCGTTAGTTAGAAATGAAGTAGTGCTGAATCAGCAGTTTTCTGTTCGATTAGATCGACGCCTGAGATTAAAACAAAGACGTTTAAATGAAAAGTCCTCAAACTGGAAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309098 lncRNA downstream 87309 24870714 ~ 24873747 (-) True G260942
TU309075 lncRNA downstream 96166 24844027 ~ 24864890 (-) True G260921
TU309036 lncRNA downstream 230513 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 232687 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 235679 24724222 ~ 24725377 (-) True G260894
TU309120 lncRNA upstream 9820 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 77256 25042151 ~ 25042595 (-) False G260972
TU309081 lncRNA upstream 78553 25043448 ~ 25046293 (-) True G260926
TU309137 lncRNA upstream 107816 25072711 ~ 25073088 (-) True G260976
TU309140 lncRNA upstream 123744 25088639 ~ 25089918 (-) True G260979
XM_034312000.1 mRNA downstream 1038 24932584 ~ 24960018 (-) False corin
XM_034311999.1 mRNA downstream 7041 24932584 ~ 24954015 (-) False corin
XM_034312001.1 mRNA downstream 10801 24932584 ~ 24950255 (-) True corin
XM_034312224.1 mRNA downstream 31670 24921918 ~ 24929386 (-) True LOC117599306
XM_034311617.1 mRNA downstream 62381 24888734 ~ 24898675 (-) True LOC113525311
XM_026911789.2 mRNA upstream 12999 24977894 ~ 24982298 (-) True cnga1b
XM_034311595.1 mRNA upstream 19084 24983979 ~ 25008193 (-) False si:ch211-149b19.4
XM_034311597.1 mRNA upstream 19084 24983979 ~ 25008186 (-) False si:ch211-149b19.4
XM_034311596.1 mRNA upstream 19084 24983979 ~ 24996680 (-) False si:ch211-149b19.4
XM_034312192.1 mRNA upstream 50317 25015212 ~ 25026090 (-) True tfr2
TU309105 other downstream 77911 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 166159 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 452589 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 452723 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1196893 23763674 ~ 23764163 (-) True G260310
TU309088 other upstream 19564 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 25681 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 75896 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 111925 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile