RNA id: TU309124


Basic Information

Item Value
RNA id TU309124
length 3412
RNA type TUCP
GC content 0.45
exon number 2
gene id si:ch211-149b19.4
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24983979 ~ 25008193 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAAAGTAATCCGTTTTAAATACATggtgaataaacacacaggaaactGTTACAGCTGCATGAACCATTGCAttatgagatttatttattttatttatttatcatctaAAATAGAAACCATGCTTGGGGAGTACAAGatcaatctgaaaaaaaaaacaacaactttccCCTGTCGTTATAATGATACACTTACAATACAGATTTTCGGAGCTATCAGTATCTTTACAGCTAGTTTTATTCGAGGTAAAAGATGTTTGAGTTAAATCTGGATCCCATTtccattccaaaaaaaaacagcaattcaTTCCTGAGAGGAGAAAACTGACCTACATCAACTACATCAATCCCAAGTggagttaaagaaaaaaaaatgttaaagctCCAATCAGGAAATTCGCTAAAACAGTGTCATGGCTGCTCCAGGGATCTACGCTAAGAGAGAACAATTTGCTAACATTATGCATGTTTGCTAAAGGAGAACTTGATTGCTAACAGAGAATATGACTGCTAATAGTATGTATgaatgctaacatgctaacctTCCATACTGTAATAAACTGCTTATAACAAGCACCAACCTTCCGTTAGCAATTCCTGACTCGGTCTTTAATTGTTAAAAACATATGCTAAGtttatgcatgttttattttatttactttcctcACTGCTGTTGGTTTTTTGTCTCCTGTTGCTACGCTGATGATAACGTCTGGTACTTTGTGGCCTTCGGACATTTTTCTGGACTGATTGTCCACTTTGACTAGCTATGGGAACTTTCAGGGCTTGGAGGAACGACGTCCAGAGTTTGGCGGCTATGATTTTAGCAGGTGTCTCTACAGGAAATTGACTGATTATCCCCTGGTTGGACTTCCTGTCTTGTGTGTTTTCCTCATCGCTGCTGTTTTCAGTGTGTTGCACGTGGCTTGTTTGGCTAGAGATGGGCAACACTGTGGATGGGGTAGAGATCTGAGATTCCCGAGACTCCTCACTGTCATTAGCAGTgttagcattagcgttagctTCAGCACTATTATCTAATTCTCCACCGCTCTGAGTTGTAACGTGCAGGCTAGCGCTCGGATTTGGCGTGGTATTCTCACTGGAGGCGTCTTCGTTGCTAGTAAGTGAATCACTTGTTGGCactgattcagagtcgaatGTTGGGCTCTCTGTGGTGAGGGCCACTGATTCACGAGTCACTTCTGCACTGATTCCTGGGCTATCGGTTGCAGATTCGTTTGAAAACGATTCTTCGTTCTGGTTGTTTTCAGAGGTGTTGTCTGAGGGGGTAGAATCAGGGTTTGTCCCAACAACAGTTCCTTCTTCATTGGATCCACCTTTGAACGCAAGAGCCATGATGCGCTCGATTGTGTTGACCAGTGGCTCATCTTCTTCTGAACTAAATGCGGGTATGAGATCTACAGGTGACTGACTCTGAGGTTCTTCTTCATTGTGTACCTCCTGGATGTTATGAATGACCTGAACCACAGACGTCTGAATTGCTGGACCTTGAGTTCCATGGTTTCCTGGCTGGTCCATTGGATTCTGGCTCTCTTGTTCAGAGTCTGTGGTCTCAACACTCTCCTCACTGCTGGAGCTCCCTGTTGCAGCCATTTGCTTGCGTGCAGCATCAGCCCTGGTTCTGGTACCCTCTTCACTATTGGACACAGCAGGATCAAGAGGATTGTTAGAATCATTTGGACCTTTGGAAGGCTGCAGTCCCGCAGTTTCTCTGCTGGTTTCGATAGAGCTGGAGTTTGATGGTTCTTCTGATGGCATGTTGTGTGCAGAATCCGTGTTCTCAGAACCTTCAGGAAGTGATACTGGGGTACTTGATGGTGAAATGGAGGGTGACTGAGGTTGTTCTTCGCTGTGTGAGTTATCCTGGTTGTTTGAAGTCTCTGTAGGACGGCTCTCGTTTTCTTCTACTGAGTATGCTGGAGTGGTTTCTTGCGCTACGTCATGTCTTGGATCTTCACCCTTTGTTTCACGATATGGGTCCTGGTTGTCATATCCTGCCTGATAGGGGTCATACCTTGTTCCATAGGGGTCGTAACCTGCCCCATAGGGGTCATATCCTGCACGATATGGGTCATAAACTTCACCATAGGGGTCATAGCCTGCTTGATAAGGGTCATAACCTGCTTGATAGGGGTCATAACCTGCTTGATAGGGGTCATAACCTGCTTGATAGGGGTCATACCCTGCACCATAGGGGTCGTACCCGGGATAGTTCCTGTATGGGTCATAATATCTGGGATCATACTGCCAATCATCATTAACATACTCAGGATAAAAGTCTGAACCAGAGAAGAAAGGTGTTGGAGGACCTTCGTTCTTCTTCACCAGTTCTGTATTTACCATGGACTCTGGACCTGAGTTGAGACTTGGGATCTTGCTCGGTGTTGGATCAGTGATACTGTTCTTGCATCCATCATCTGTTTCCTCCTCTGAGCTGGAGCTGAGTGCTGAAGCTGTCTGAAAAGGTCCTAACATAGGTTCTGAGTTTGTAGGAACAGTCTGACCTTCTACAGAGGAGATATCTGATCTGGGGTCAGTTTCTTTGCCATTTGCTTCTGCTGAAGTGGTTTCCTCATGGATTAAGGTAGATGCAAGAGCTGATCTGAGACCTttgagttgtccagggagatagTGTAGGACTGAAGGTTCTGCGCTGTCTGATTGATCAGTATGGACCTTTGTCTTTTGGTGCTCTGATCCAGAATCAGACTCATTTGAGTCCTCTTGTAAGCTGGATGTATCTGAGGTGGTTGTAGTTTCAAGGCCTTTTGGATGGCCTGGGTCAGATTCTTCAGAGTCGACTCTGGAGTCAGACTGAGAACTTGTGCTGTGTATCTGATCTTCATCACTCTTATCATCTCTTGGATTTGGTGTTTCCTCCTCGCTTTTGTCCAACTCTTCATCACTGTTTAGCACCTCAGGTCCTTCTGTTGGGTCAAATTCCTCTTCACTTGCCTCCCCATCGTTATCGGTGATGTTTTTCTCTTCGGATTTGCCAGGTCCAGCCGCACGATGCTGCATTCCTTCATCACTGCTCACAGAGAAGACGAAGCTCACGACATCGATGGAAACGTTGGTATTCTCATCCCGTAAACTGACTGTAACTGTGCTCTGGCCTTTCTCATTGGGTTTTCCAAAACCAGCAGGTGCTGTGAttatgatgtcacttcctggGGTTCCCCTAAACTGAGTGACACGTGAGGTGACCTGAAAAAAGACGTCAACACTGATTCAGAAAGAAGTTCTGTAATTACACAGATAATTTCGGGTTTCAGCAGAGCTTTTACACTCGGCTGCTCTGACTCAGTGTCTTTGTCTAATCTCTCACGCTGAGGAAACGTCTCCCCTGCAGTCAGACAGACATGATGGCCGTCTGTGTCTCTGtccgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309120 lncRNA downstream 15269 24974715 ~ 24975307 (-) True G260962
TU309082 lncRNA downstream 25681 24961056 ~ 24964895 (-) False nfxl1
TU309098 lncRNA downstream 116829 24870714 ~ 24873747 (-) True G260942
TU309075 lncRNA downstream 125686 24844027 ~ 24864890 (-) True G260921
TU309036 lncRNA downstream 260033 24730292 ~ 24730543 (-) True G260897
TU309132 lncRNA upstream 42303 25042151 ~ 25042595 (-) False G260972
TU309081 lncRNA upstream 43600 25043448 ~ 25046293 (-) True G260926
TU309137 lncRNA upstream 72863 25072711 ~ 25073088 (-) True G260976
TU309140 lncRNA upstream 88791 25088639 ~ 25089918 (-) True G260979
XM_026911789.2 mRNA downstream 8278 24977894 ~ 24982298 (-) True cnga1b
XM_034312225.1 mRNA downstream 13509 24961021 ~ 24977067 (-) True nfxl1
XM_034312000.1 mRNA downstream 30558 24932584 ~ 24960018 (-) False corin
XM_034312192.1 mRNA upstream 15364 25015212 ~ 25026090 (-) True tfr2
XM_034312227.1 mRNA upstream 28947 25028795 ~ 25041468 (-) True ctc1
XM_034312022.1 mRNA upstream 47772 25047620 ~ 25053567 (-) True LOC117599278
XM_034311547.1 mRNA upstream 57070 25056918 ~ 25067948 (-) True sh3gl2b
XM_034311681.1 mRNA upstream 76925 25076773 ~ 25079035 (-) True LOC117599229
TU309088 other downstream 45 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309105 other downstream 107431 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 195679 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 482109 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 482243 24505628 ~ 24508333 (-) False tent5ab
TU309131 other upstream 40943 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 76972 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile