RNA id: TU309098


Basic Information

Item Value
RNA id TU309098
length 585
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G260942
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24870714 ~ 24873747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAAAGAAACGTAGATATTTTTATACCGCGTAAAAAAACCATGTAGCTATTTTCATACTGCGTGTTGTCAGGAATCGTGTCttgtttgatgtttttatttttgcttttcctACGAATAGTTTAGGTTTCACACAATTTCTTATAAAagtgctaattattattattgcgtTCACGCTTCCTTCTCGACTCTCGCGCACTAACAGACGGATGATGAAGTGGATTCAGAATGTGCTGCGCGGGATGAACTCGTGTAGCTTCTCCTCGTctcacctgtgcaggtaatCGGGCGCTTTGTTCAGGAGTGTGTAGTACTGCCTGACGAACTCGCGCCCTACGAGCAAAGGGCTCGGTTTCTCCATCACCATCTCTTTCAGGTCACCTGGATGTGggatgctAAAAAAAAACGAGAAACGGCGCTCGCGCGGACGGCTGTGTGGTCACAGAAGCTCCGAGAAcacaaaataaactgtaaggggtgttttgtttttgatcaGAACTCGTTTTTACCGGAGACTGATTcggttttttaatgtttctgatataaacactgacacacacacagcgcttcGGCCGGCTCTTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309075 lncRNA downstream 5824 24844027 ~ 24864890 (-) True G260921
TU309036 lncRNA downstream 140171 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 142345 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 145337 24724222 ~ 24725377 (-) True G260894
TU309005 lncRNA downstream 172290 24697969 ~ 24698424 (-) True G260871
TU309082 lncRNA upstream 87309 24961056 ~ 24964895 (-) False nfxl1
TU309120 lncRNA upstream 100968 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 168404 25042151 ~ 25042595 (-) False G260972
TU309081 lncRNA upstream 169701 25043448 ~ 25046293 (-) True G260926
TU309137 lncRNA upstream 198964 25072711 ~ 25073088 (-) True G260976
XM_026911797.2 mRNA downstream 18847 24836832 ~ 24851867 (-) False tec
XM_026911798.2 mRNA downstream 18847 24836832 ~ 24851867 (-) True tec
XM_034312160.1 mRNA downstream 21852 24836832 ~ 24848862 (-) False tec
XM_026911800.2 mRNA downstream 33986 24828532 ~ 24836728 (-) True si:ch73-106g13.1
XM_026921301.2 mRNA downstream 75291 24789758 ~ 24795423 (-) False si:ch1073-157b13.1
XM_034311617.1 mRNA upstream 14987 24888734 ~ 24898675 (-) True LOC113525311
XM_034311619.1 mRNA upstream 14987 24888734 ~ 24898045 (-) False LOC113525311
XM_034312224.1 mRNA upstream 48171 24921918 ~ 24929386 (-) True LOC117599306
XM_034312000.1 mRNA upstream 58837 24932584 ~ 24960018 (-) False corin
XM_034311999.1 mRNA upstream 58837 24932584 ~ 24954015 (-) False corin
XR_004579701.1 other downstream 75817 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 362247 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 362381 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1106551 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1630368 23198582 ~ 23240346 (-) False LOC113530288
TU309105 other upstream 7211 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 110712 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 116829 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 167044 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 203073 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU390167 True 462 TUCP 0.58 2 CI01000129 1836919 ~ 1837748 (-)
mexican tetra (Astyanax mexicanus) TU390167 True 220 lncRNA 0.35 2 NW_019172568.1 16040 ~ 18387 (+)