RNA id: TU309131


Basic Information

Item Value
RNA id TU309131
length 344
RNA type TUCP
GC content 0.54
exon number 3
gene id G260972
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25040791 ~ 25042595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGGGTTTCTTTCTAATGGAAGGTTATAGCGCCTGAGTGTGaataagacattaataacaGGGTTCATAACGTGGCGCGGgtgagagagagtcagtgagCGCGTCCTGAACGCGCTTCATGCGGGAGATGGAGGAGTTTATAGAGCATTATAAACACTACACTGCAGTGgagcgGGCGTGGCTGTGTGAGGTGTacacaggagtgtgtgattggttgCACCCGGTGGTGGGCGTGTCTGTGGGCGTGTCGGAGGAGGAGCTGGCGCACGCTGTGGTGCTGAGACTTCAGAGGACTCATCACTCTCTACCAATCAGCTACAGTTGCGTCTCAGTGTGCACAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309120 lncRNA downstream 65484 24974715 ~ 24975307 (-) True G260962
TU309082 lncRNA downstream 75896 24961056 ~ 24964895 (-) False nfxl1
TU309098 lncRNA downstream 167044 24870714 ~ 24873747 (-) True G260942
TU309075 lncRNA downstream 175901 24844027 ~ 24864890 (-) True G260921
TU309036 lncRNA downstream 310248 24730292 ~ 24730543 (-) True G260897
TU309081 lncRNA upstream 853 25043448 ~ 25046293 (-) True G260926
TU309137 lncRNA upstream 30116 25072711 ~ 25073088 (-) True G260976
TU309140 lncRNA upstream 46044 25088639 ~ 25089918 (-) True G260979
XM_034312192.1 mRNA downstream 14701 25015212 ~ 25026090 (-) True tfr2
XM_034311595.1 mRNA downstream 32598 24983979 ~ 25008193 (-) False si:ch211-149b19.4
XM_034311597.1 mRNA downstream 32605 24983979 ~ 25008186 (-) False si:ch211-149b19.4
XM_034311596.1 mRNA downstream 44111 24983979 ~ 24996680 (-) False si:ch211-149b19.4
XM_026911789.2 mRNA downstream 58493 24977894 ~ 24982298 (-) True cnga1b
XM_034312022.1 mRNA upstream 5025 25047620 ~ 25053567 (-) True LOC117599278
XM_034311547.1 mRNA upstream 14323 25056918 ~ 25067948 (-) True sh3gl2b
XM_034311681.1 mRNA upstream 34178 25076773 ~ 25079035 (-) True LOC117599229
XM_034311593.1 mRNA upstream 63113 25105708 ~ 25111538 (-) True LOC113525390
TU309124 other downstream 40943 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309088 other downstream 50260 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309105 other downstream 157646 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 245894 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 532324 24501733 ~ 24508467 (-) False tent5ab
TU309138 other upstream 34225 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile