RNA id: TU309138


Basic Information

Item Value
RNA id TU309138
length 692
RNA type TUCP
GC content 0.51
exon number 5
gene id LOC117599229
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25076773 ~ 25079035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcatgcgcagtgacGCACTCCCACAGTCCATGGCGTTGTTAGCTGATTAGCATGTTGGGGTTTTTGTTAAGTGTGTTTTGAAGCATGTCTCCGGAGCTGAATGATTTTCTGTTTTAGACTCAGCGCATAAAATCTCGAGATATTATTCTACATTTAATGCCGGAAGTGTAACGGAAACAGAGCAGCGCGCGCGGACAGAATGAATCAGTTTGAGGAtttgaaagaggaagaagcagaagagaagaggaatgtGACCGACTCTGAGTCTgtgaataataacaataataacaggaGAAAGacagtaACCCCGGCTCCAGGTGAACATCCTCTGCAGTATAACTACACGTTCTGGTATTCGCGCCGGACCCCCAGCAGACCCGCAAACACACAGAGCTATGAACAGAACATCCGACAGATCGGCACCGTCGCCtcggtggaaCAGTTCTGGAAGTTCTACAGTCACCTGGTTCGTCCTGGAGATCTGACGGGTCACAGCGACTTCCACTTGTTCAAAGAGGGAATCAAGCCCATgtgggaggatgAAGCCAATAAGAACGGGGGGAAGTGGATTATCCGGCTGCGTAAGGGTTTGGCGTCGAGGTTCTGGGAGAACATTATCCTGGCGATGCTGGGGGAGCAGTTCATGGTGGGGGAGGAGGTGTGCGGCGTCGTCGTCTCCATACGCTTTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309137 lncRNA downstream 3732 25072711 ~ 25073088 (-) True G260976
TU309081 lncRNA downstream 30527 25043448 ~ 25046293 (-) True G260926
TU309132 lncRNA downstream 34225 25042151 ~ 25042595 (-) False G260972
TU309120 lncRNA downstream 101513 24974715 ~ 24975307 (-) True G260962
TU309082 lncRNA downstream 111925 24961056 ~ 24964895 (-) False nfxl1
TU309140 lncRNA upstream 9612 25088639 ~ 25089918 (-) True G260979
XM_034311547.1 mRNA downstream 8872 25056918 ~ 25067948 (-) True sh3gl2b
XM_034312022.1 mRNA downstream 23253 25047620 ~ 25053567 (-) True LOC117599278
XM_034312227.1 mRNA downstream 35352 25028795 ~ 25041468 (-) True ctc1
XM_034312192.1 mRNA downstream 50730 25015212 ~ 25026090 (-) True tfr2
XM_034311595.1 mRNA downstream 68627 24983979 ~ 25008193 (-) False si:ch211-149b19.4
XM_034311593.1 mRNA upstream 26681 25105708 ~ 25111538 (-) True LOC113525390
TU309131 other downstream 34225 25040791 ~ 25042595 (-) True G260972
TU309124 other downstream 76972 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309088 other downstream 86289 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309105 other downstream 193675 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 281923 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00009542 True 720 mRNA 0.56 6 CM030126.1 41123722 ~ 41132114 (+)