RNA id: XM_034311681.1


Basic Information

Item Value
RNA id XM_034311681.1
length 747
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC117599229
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25076773 ~ 25079035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGggttgcgcatgcgcagtgacGCACTCCCACAGTCCATGGCGTTGTTAGCTGATTAGCATGTTGGGGTTTTTGTTAAGTGTGTTTTGAAGCATGTCTCCGGAGCTGAATGATTTTCTGTTTTAGACTCAGCGCATAAAATCTCGAGATATTATTCTACATTTAATGCCGGAAGTGTAACGGAAACAGAGCAGCGCGCGCGGACAGAATGAATCAGTTTGAGGAtttgaaagaggaagaagcagaagagaagaggaatgtGACCGACTCTGAGTCTgtgaataataacaataataacaggaGAAAGacagtaACCCCGGCTCCAGGTGAACATCCTCTGCAGTATAACTACACGTTCTGGTATTCGCGCCGGACCCCCAGCAGACCCGCAAACACACAGAGCTATGAACAGAACATCCGACAGATCGGCACCGTCGCCtcggtggaaCAGTTCTGGAAGTTCTACAGTCACCTGGTTCGTCCTGGAGATCTGACGGGTCACAGCGACTTCCACTTGTTCAAAGAGGGAATCAAGCCCATgtgggaggatgAAGCCAATAAGAACGGGGGGAAGTGGATTATCCGGCTGCGTAAGGGTTTGGCGTCGAGGTTCTGGGAGAACATTATCCTGGCGATGCTGGGGGAGCAGTTCATGGTGGGGGAGGAGGTGTGCGGCGTCGTCGTCTCCATACGCTTTCAGGTCAGAGCTCCAGCGCTGCCTTCTCTTTATTAACACACAACCTCTTAT

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309137 lncRNA downstream 3685 25072711 ~ 25073088 (-) True G260976
TU309081 lncRNA downstream 30480 25043448 ~ 25046293 (-) True G260926
TU309132 lncRNA downstream 34178 25042151 ~ 25042595 (-) False G260972
TU309120 lncRNA downstream 101466 24974715 ~ 24975307 (-) True G260962
TU309082 lncRNA downstream 111878 24961056 ~ 24964895 (-) False nfxl1
TU309140 lncRNA upstream 9604 25088639 ~ 25089918 (-) True G260979
XM_034311547.1 mRNA downstream 8825 25056918 ~ 25067948 (-) True sh3gl2b
XM_034312022.1 mRNA downstream 23206 25047620 ~ 25053567 (-) True LOC117599278
XM_034312227.1 mRNA downstream 35305 25028795 ~ 25041468 (-) True ctc1
XM_034312192.1 mRNA downstream 50683 25015212 ~ 25026090 (-) True tfr2
XM_034311597.1 mRNA downstream 68587 24983979 ~ 25008186 (-) False si:ch211-149b19.4
XM_034311593.1 mRNA upstream 26673 25105708 ~ 25111538 (-) True LOC113525390
TU309131 other downstream 34178 25040791 ~ 25042595 (-) True G260972
TU309124 other downstream 76925 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309088 other downstream 86242 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309105 other downstream 193628 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 281876 24787690 ~ 24794897 (-) False si:ch1073-157b13.1

Expression Profile