RNA id: XM_026911789.2


Basic Information

Item Value
RNA id XM_026911789.2
length 2358
RNA type mRNA
GC content 0.46
exon number 9
gene id cnga1b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24977894 ~ 24982298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cTTCATGTCCACTCTGATGTACCTGTATGGATGTGTACCTGTGATGGAGGACATGCACACAGGTGTGTAGCGGGCAGTGGATTAAGCTAGCGTCAGgtggctcagccaatcagctgcCATGTCGAATAGCGTGAAGCCACTTGTTCCTCCCATAATCCTCCTGGAGGGGGTGGAGGAGGTTATCGTGGGCGACGCAGAGGACTTGACGAAGAGGCAGCGCTCTGGTGCTGGTGCACTTTtcaacatcaacaacagcaacaacaatgaggaagaggagaagaaagagaaaaagaagaaagaaaagaaagaaaagaaggggaaaaaagagaaaaaagaaaagaaagaaaagaaggaaaagaaggagaagaaggacaAAGAgcaagaggagaaagaaaaggagaaggagaaggagaaagagaaagccaAGAAAGAGGAGCCGACGGAGATTTACGTCATCGATCCTGCAGGAAACATGTACTACAACTGGCTCTTCGTCATCACGTGTCCTGTCATGTATAACTGGGTTCTGATCATCGCCAGAGCCTGTTTTGAGGAGTTGCAGCACGATTATTTGATATACTGGTTCATCACAGATTTTCTGGCAGACCTGGTGTACCTGGCAGACATGGTCTTCAGGACAAGAACAGGGTATCTGGAGCAGGGTCTGCTGGTTAAAGACGAAAAAAAGCTCCGAGCACGATACATAGAGAGTATCCAGTTCAAGCTGGACCTCATCTCCATGATTCCCACAGACATTTGTTACCTTTTTGTTGGTATCAACTACCCCGAGATCCGTATGAACAAGCTCTTCCGGGTCAACCGCCTCTTTGAGTTTTTCCAGCGCACAGAAACAAGGACCAACTTTCCCAACGTCTTCCGAATCTCCAACCTTGTCATGtacatcgtcatcatcatccacTGGAACGCTTGCCTCTACTACTCATTCTCCAAAGCTATTGGTTTTGGCGCTGATAGATTCGTCTATCCGGATACTACGGACCCAGAATTTGGCCGTTTGGTGAGGAAATATGCGTACAGCATGTACTGGTCCACTTTGACCTTGACCACCATTGGTGAAACTCCGCCTCCTGAGAAGGATTCTGAGTACTTCTTTGTGGTTACAGACTTCCTAGTGGGAGTTTTGATCTTTGCTACAATCGTTGGTAATGTCGGTTCCATGATCACAAACATGAATGCAGCACGAGCAGATTTTCAAGCCCGAATTGACGCCATCAAGCAGTACATGAGTTTTCGTAATGTGACCAAGGATCTGGAGAAACGCGTCATCAAATGGTTTGATTACCTTTGGACCAATAAGAAGGCTGTAGATGAGAGGGAAGTGCTCAAGTACCTTCCAGACAAGTTAAGAGCAGAAATCGCCATCAATGTGCACCTGGACACTCTTAAGAAAGTGAGAATCTTTGCAGATTGTGAGGCAGGACTTTTGGTTGAACTTGTGCTGAAGCTCCAGCCGCAGGTTTACAGTCCAGGTGATTATATTTGCAAAAAAGGCGATATTGGCCGTGAGATGTACATCATCAAAGAAGGAAAGCTTGCTGTGGTGGCTGACGATGGCATTACACAATTTGTTGTTCTCAGCGATGGAAGCTACTTTGGTGAGATCAGCATCCTCAATATCAAGGGCAGCAAAGCTGGAAACCGAAGAACGGCCAACATACGCAGCATCGGATACTCTGATTTGTTCTGCCTTTCCAAGGACGACTTGATGGAGGCTCTGACCGAGTATCCAGATGCAAAGGCTATGCTGGAGGAAAAGGGACGCCAGATCCTCATGAAGGACAACCTGCTGGATCTTGAGATGGCAAAACAGGGACCAGACCCCAAGGACATGGAAGAAAAAGTGATAAAGATTGGAACGGTATTGGACGACATGCAAACGCGTTTCGCCCGTTTACTCGCTCAACATGAGGCCACGCAGAGCCGCCTGAAGAGACGTGTCACCAGACTGGAGAGCAAAGTCATCACCTCCACCAGCGTCACCTTCACCGAGATGACTGAGACAGAGCCGGGGGTTCTGCCTCCTCCTCCCGAGAAATCAGAGGAGAAGAAAGACGAGAAGTAAAACAGTGATGGGAAAGAGAACTGACTCTGTGGATTTCTAAGCAGTGAGCGAGGGGATTAAAGAGGAATGgacattataaaaaatatgcagAGTATGAATAAGAGGTTTAAAGGAGGTTTTATCTGACGCACGTTAAAACACGGCTTTTATTCCATGTGAACAAAGATTCCTAGAACCCTGAGAACAATCCTGTGAAATTATTCACCATTTAGTGTTTTATTGCCATTTTGAACATCACGTGGCTTTAATTAGACAAACAGATAAAACCCAAAATT

Function

GO: NA

KEGG:

id description
K04948 CNGA1; cyclic nucleotide gated channel alpha 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309120 lncRNA downstream 2587 24974715 ~ 24975307 (-) True G260962
TU309082 lncRNA downstream 12999 24961056 ~ 24964895 (-) False nfxl1
TU309098 lncRNA downstream 104147 24870714 ~ 24873747 (-) True G260942
TU309075 lncRNA downstream 113004 24844027 ~ 24864890 (-) True G260921
TU309036 lncRNA downstream 247351 24730292 ~ 24730543 (-) True G260897
TU309132 lncRNA upstream 59853 25042151 ~ 25042595 (-) False G260972
TU309081 lncRNA upstream 61150 25043448 ~ 25046293 (-) True G260926
TU309137 lncRNA upstream 90413 25072711 ~ 25073088 (-) True G260976
TU309140 lncRNA upstream 106341 25088639 ~ 25089918 (-) True G260979
XM_034312225.1 mRNA downstream 827 24961021 ~ 24977067 (-) True nfxl1
XM_034312000.1 mRNA downstream 17876 24932584 ~ 24960018 (-) False corin
XM_034311999.1 mRNA downstream 23879 24932584 ~ 24954015 (-) False corin
XM_034312001.1 mRNA downstream 27639 24932584 ~ 24950255 (-) True corin
XM_034312224.1 mRNA downstream 48508 24921918 ~ 24929386 (-) True LOC117599306
XM_034311595.1 mRNA upstream 1681 24983979 ~ 25008193 (-) False si:ch211-149b19.4
XM_034311597.1 mRNA upstream 1681 24983979 ~ 25008186 (-) False si:ch211-149b19.4
XM_034311596.1 mRNA upstream 1681 24983979 ~ 24996680 (-) False si:ch211-149b19.4
XM_034312192.1 mRNA upstream 32914 25015212 ~ 25026090 (-) True tfr2
XM_034312227.1 mRNA upstream 46497 25028795 ~ 25041468 (-) True ctc1
TU309105 other downstream 94749 24880958 ~ 24883145 (-) True G260947
XR_004579701.1 other downstream 182997 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 469427 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 469561 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1213731 23763674 ~ 23764163 (-) True G260310
TU309088 other upstream 2161 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 8278 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 58493 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 94522 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile