RNA id: XM_026911797.2


Basic Information

Item Value
RNA id XM_026911797.2
length 2369
RNA type mRNA
GC content 0.51
exon number 18
gene id tec
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24836832 ~ 24851867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacagaggcacacacacacacacacacacacacacacacagaggcacttCCGTTCTGAAACGGACTCCTGCTAGTTCCTGGTTGTGGAGTTCAGATTAAAGACGCTCTGCACCTAAACACTGAgcccgtgtgtgtgagtgtgtgtgagcgtgtgtatgagtgtgtatgatcGCGCACGAGCGTGTGTGATGTAGATGGCCAATCCGAGCGTGTTTAGAGCTCAGAGATGAGTTTCGAAGCCATTCTGGAGGAGACTCTGATCAAACGGTCGCAGCAGAAGAAGCGAACTTCGCCACTCAACTATAAAGAGCGAGTTTTTGTCCTCACCAAGACTAAACTGACATACTACGAGGGACGCGTTGAGaagaagTTCAAGAAGGGCTCCATCGACCTGCAGCGTGTCAGGTGTGTTGAGATCGTTAAGAATGGAGGTTTGGTCATCCcgtgtgaaaataaataccCCTTCCAGgtggTTTATGATGTGAACACGCTGTATATTTTCGCTCCCAGTAACGAGAGCAGGAGTGCGTGGGTACAAAACATGAAGGAGGAGATAAAGAACAATCCTCAGATCATGGAGAAGTTCCACCCGCAGTTCTGGCAGGGGGAGTGGCTGTGCTGCGGTCAGGAGGATAAACTCGCGCTGGGCTGTGAGGAGTACAACCTGTTCGGAGACAtttCACGGAAACCGCTCCCCCCTATTCCTAGTGCAGAGTCTAAATGTCGACGCCCACTGCCACAGCTTCCCCCTGAAGAGGAAGAGCAGGACCCTAAAGAGGAAGTGGTCATcgcactgtatgattttgagggAACAGAAAGTCAGGATCTCACGCTGCGTCAGGGGGAGGAGTACGTCATCATCGAGAGGTGTGACGTCAACTGGTACAAAGCACGCAACAAATacggggagGAAGGCTACATTCCCAGCAACTATGTGACCCCAAAGCAGCCAGATAATTTGGAGCAGTTTGTgtggtACTGCAAAAATGTGAACCGCAACAAAGCAGAGGAGCAGTTAAggaaagaggatAAAGAGGGAGGGTTCATGGTGCGAAACTCCAGTTCTGGTGCCTACACCGTTTCTGTGTTCACAAAGTCTTTGGGTGATGGAGGCTCAGCGATTAGACATTACTACATTAAAGAGACTCAGAGCTCACCTAAACAGTTTTACCTGGCGGAGAAACACCAGTTCAGCAGCATTCCTGAACTCATAGAGTACCACAAACACAACGcagcaggtttggtGTCCAGACTTCGTTATCCAGTAAATAGACAAAGCAGAGCAGCACCAACGACAGCAGGATTCAGCTAtgataagTGGGAGATTAACCCGTGTGAGCTGACCTTCATGAAGGAGCTCGGCAGCGGGCAGGTCGGAGTGGTGCGACTGGGAAAATGGAGAGCGCAGCACAAAGTGGCCATTAAAGCCATCAGAGAGGGAGCCATGAGTGAAGAGGACTTTATAGAGGAGGCCAAAGTGATgatGAGTCTGTCCCACCCGAAGCTGGTCCAGTTATACGGTGTGTGTACGCAGCAGAGGCCCATCTACCTGGTGACGGAGTTCATGGAGCTCGGCTGTCTCCTGAATTACATCCGTCAGCGCCGAGGCTCATTCAGCCCGCAAAGTCTGCTCAGCATCTGCCACGACGTCAGCCAGGGCATGGAGTACCTGGAGGCGAACCGCTTCCTCCATCGGGATCTGGCTGCTAGAAACTGCCTCGTCAGCGACTCACATGTGGTGAAAGTGTCAGACTTCGGCATGGCCAGATACGTTCTGGACGATCAGTACCTCAGTTCCTCAGGAGCCAAGTTTCCAGTGAAGTGGTCTCCACCTGAGGTCTTTAACTTCTGTCGATACAGCAGCAAGTCTGACGTCTGGTCCTTCGgtgtgttaatgtgggaGGTGTTTACCGAGGGGAAGATGCCGTTTGAGAACAACCTGAACCATGAGGTCGTAACCATGGTGATGCAGGGTCATCGCCTCTATCGCCCTAAAAAAGCCGCGCTGCGCATCTACGAAATCATGCAGCAGTGCTGGCAGGAGAGACCGGAGGAAAGGCCGTCGTTTAGACAGATCTCAGAGATGATCACGGATGAGCTGGAAACAGATGGCCACGCCTCCTGATCGCTGATTGGACGAGCTGACTCAGTACTGATGCATTACTGCTCATAATTCTCCTCATTGAACCACAAAAGTGATGGAACCTACCGGAAGCATTCAGTATGAAACATAGCTGCAAGTCagtagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtttcatattttacataaagCATAATAATGTGCGTGGCTGCCTGTACAAGCCtgtaataaaagaaatgaaaatcacCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309036 lncRNA downstream 106289 24730292 ~ 24730543 (-) True G260897
TU309034 lncRNA downstream 108463 24725850 ~ 24728369 (-) True G260895
TU309033 lncRNA downstream 111455 24724222 ~ 24725377 (-) True G260894
TU309005 lncRNA downstream 138408 24697969 ~ 24698424 (-) True G260871
TU309021 lncRNA downstream 142586 24693335 ~ 24694246 (-) True G260885
TU309098 lncRNA upstream 18847 24870714 ~ 24873747 (-) True G260942
TU309082 lncRNA upstream 109189 24961056 ~ 24964895 (-) False nfxl1
TU309120 lncRNA upstream 122848 24974715 ~ 24975307 (-) True G260962
TU309132 lncRNA upstream 190284 25042151 ~ 25042595 (-) False G260972
TU309081 lncRNA upstream 191581 25043448 ~ 25046293 (-) True G260926
XM_026911800.2 mRNA downstream 104 24828532 ~ 24836728 (-) True si:ch73-106g13.1
XM_026921301.2 mRNA downstream 41409 24789758 ~ 24795423 (-) False si:ch1073-157b13.1
XM_034311728.1 mRNA downstream 41480 24789758 ~ 24795352 (-) False si:ch1073-157b13.1
XM_026921300.2 mRNA downstream 41935 24789758 ~ 24794897 (-) True si:ch1073-157b13.1
XM_026921302.2 mRNA downstream 41941 24789758 ~ 24794891 (-) False si:ch1073-157b13.1
XM_034311617.1 mRNA upstream 36867 24888734 ~ 24898675 (-) True LOC113525311
XM_034311619.1 mRNA upstream 36867 24888734 ~ 24898045 (-) False LOC113525311
XM_034312224.1 mRNA upstream 70051 24921918 ~ 24929386 (-) True LOC117599306
XM_034312000.1 mRNA upstream 80717 24932584 ~ 24960018 (-) False corin
XM_034311999.1 mRNA upstream 80717 24932584 ~ 24954015 (-) False corin
XR_004579701.1 other downstream 41935 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
XR_004579755.1 other downstream 328365 24501733 ~ 24508467 (-) False tent5ab
TU308938 other downstream 328499 24505628 ~ 24508333 (-) False tent5ab
TU308180 other downstream 1072669 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1596486 23198582 ~ 23240346 (-) False LOC113530288
TU309105 other upstream 29091 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 132592 24984459 ~ 24990531 (-) False si:ch211-149b19.4
TU309124 other upstream 138709 24990576 ~ 24999848 (-) True si:ch211-149b19.4
TU309131 other upstream 188924 25040791 ~ 25042595 (-) True G260972
TU309138 other upstream 224953 25076820 ~ 25079027 (-) False LOC117599229

Expression Profile